Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0348 ATGGGAAGGGGGAAGATCGAGATCAAGCGGATCGAAAACACCACTAACCGGCAGGTTACTTTCTGCAAGCGCCGCAACGGCTTACTCAAGAAGGCCTATGAATTATCTGTCCTATGTGATGCAGAGGTAGCCCTCATCGTCTTCTCCAGCCGCGGCCGCCTCTACGAATATGCCAACAACAGTGTTAAATCAACAATTGAGAGGTATAAGAAGGCAAGCGCTGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAGTTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAGAATTCGAACAGGCACATGCTGGGTGAGTCTCTGGGCTCCTTGAATTTCAAGGACCTCAAGAGCCTGGAGATTCGGTTAGAGAAAGGCATAAGTAGAATCAGATCCAGAAAGAATGAGCTGTTGTTTGCTGAGATCGAGTATATGCAAAAGAGGGAAATAGACTTGCATAATGATAACCAGTATCTCCGAGCAAGGATAGCCGAGAATGAGAGAAACGAACAGCAGATGAGCTTGATGCCAGGAGGAGCTAACTATGAACTCATGCCATCTCAGCAGTTCGACTCTAGAAACTATTTCCAACTAAATGGACTGCAACCAAATCAATCATACTCTCGCCAAGACCAACCAGCTCTTCAATTAGTGTAA 681 0.464 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKSTIERYKKASADSSNTGSVSEANAQFYQQESSKLHQQIRNLQNSNRHMLGESLGSLNFKDLKSLEIRLEKGISRIRSRKNELLFAEIEYMQKREIDLHNDNQYLRARIAENERNEQQMSLMPGGANYELMPSQQFDSRNYFQLNGLQPNQSYSRQDQPALQLV* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0348 226 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi10g0348 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi10g0348 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 181 - -
Vvi10g0348 226 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vvi10g0348 226 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi10g0348 226 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi10g0348 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi10g0348 226 Coils Coil 87 107 - -
Vvi10g0348 226 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Vvi10g0348 226 FunFam agamous-like MADS-box protein AGL11 13 96 - -
Vvi10g0348 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi10g0348 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi10g0348 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi10g0348 226 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi10g0348 226 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0348 Vvi-Chr10 3730930 3738385 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0348 1 226 MADS-box Gene Family AT3G58780 69.957 6.00e-114 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vvi10g0348 K-box 6.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0348 K09264 - vvi:100261787 442.965