Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0343 ATGATGGAAAAAGAACTTAGAGGGCTAGATCTGCAAACCGGTTCCTTCACTTTGAGACAAATAAAAGCTGCAACCAACAACTTCGATTATGCGAACAAGATTGGAGAAGGGGGTTTTGGATCCGTATACAAGGGTCAACTATCAGATGGCACTGTTATTGCTGTGAAGCAGCTCTCTTCTAAATCAAGGCAAGGGAACCGTGAATTTGTGAATGAGATAGGCATCATTTCATGTTTGCATCACCCCAATCTCGTAAAGCTTTATGGGTGTTGTATTGAAGGAAATCAATTGCTGCTTGTCTATGAGTACATGGAAAATAATTCTCTTGCACGTGCTCTTTTTGAAAGAAGTGTTTTGAAATTGGATTGGGCTACGAGGTACAAGATATGTGTTGGGATAGCCAAGGGTCTCACATTTCTCCATGAAGAATCAAGAATCATGATAGTTCATAGGGACATCAAAGCTACAAATGTACTCCTTGATGAGAATCTAAATGCTAAAATATCAGATTTTGGATTAGCTAAGCTCAATGAAGGGGAGAACACCCACATTAGCACCCGAATTGCTGGAACCATTGGATATATGGCTCCAGAGTACGCACTATGGGGTTATCTGACAGACAAAGCGGATGTTTACAGCTTTGGGGTGGTCACACTAGAAATTGTTAGTGGGAAGAACAACTCAAATTACACGCCAGACACCACATGCACTTGCCTTCTTGATTGGGCTTTTGTTTTGAAACAAAAGGGAAGCTTGATGGAATTGGTAGATCCAAACTTGGGAACTGAATTTAATAAGAAAGAGGCAGAAACAATGATTAAAGTAGCTCTCCTATGTACCAATGCATCTTCTAAACTTAGGCCTACCATGTCAGCAGTGCTAAGAATGCTTGAAGGACAAGATATTATTCCAGAAGTGATCTCAGATCCTAGCATCTATGGCAAAGATATGAGAATTAGTCCCCTCAGAGACCACTATCAACACATGGAAATGCAGAGTTCTAGTGGAAGCCTGGCCCCAAATTTTTCATTAGATGGAGCACAGGTTGGTTCATCCTCTTCTGCTTAA 1068 0.4092 MMEKELRGLDLQTGSFTLRQIKAATNNFDYANKIGEGGFGSVYKGQLSDGTVIAVKQLSSKSRQGNREFVNEIGIISCLHHPNLVKLYGCCIEGNQLLLVYEYMENNSLARALFERSVLKLDWATRYKICVGIAKGLTFLHEESRIMIVHRDIKATNVLLDENLNAKISDFGLAKLNEGENTHISTRIAGTIGYMAPEYALWGYLTDKADVYSFGVVTLEIVSGKNNSNYTPDTTCTCLLDWAFVLKQKGSLMELVDPNLGTEFNKKEAETMIKVALLCTNASSKLRPTMSAVLRMLEGQDIIPEVISDPSIYGKDMRISPLRDHYQHMEMQSSSGSLAPNFSLDGAQVGSSSSA* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0343 355 Gene3D Phosphorylase Kinase; domain 1 2 103 - -
Vvi10g0343 355 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 1 103 - -
Vvi10g0343 355 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 9 335 - -
Vvi10g0343 355 Pfam Protein tyrosine and serine/threonine kinase 31 297 IPR001245 GO:0004672|GO:0006468
Vvi10g0343 355 SMART serkin_6 28 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0343 355 Gene3D Transferase(Phosphotransferase) domain 1 104 305 - -
Vvi10g0343 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Vvi10g0343 355 ProSiteProfiles Protein kinase domain profile. 28 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0343 355 FunFam Putative LRR receptor-like serine/threonine-protein kinase 104 309 - -
Vvi10g0343 355 SUPERFAMILY Protein kinase-like (PK-like) 14 302 IPR011009 -
Vvi10g0343 355 CDD STKc_IRAK 34 299 - -
Vvi10g0343 355 ProSitePatterns Protein kinases ATP-binding region signature. 34 56 IPR017441 GO:0005524
Vvi10g0343 355 MobiDBLite consensus disorder prediction 334 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0343 Vvi-Chr10 3655952 3657896 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0343 2 354 Receptor kinase-like Gene Family AT1G07650 67.697 5.40e-171 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi10g0343 PK_Tyr_Ser-Thr 3.1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0343 - - vvi:100266879 707.983