Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0340 ATGAATGATATGTTTGTCTGCAGCCAAATAGATCTTTCTTACAATAACTTTTCTGAGCAGTCTGCACCATCTTGTCGGGATTCCCTGAATTTGTTCAGAAGCTTTTCTGGTGGGAAAAACTTAGAACTTGGTGGGTGCCAGAAAGACTTTCCTTGTTCAAAAGATCATTACTCATTGCATATAAATTGTGGTGGAGAGGAAACTAGGAGTGGAAACATTGTGTATGAAGAGGATAAAGATGAAGGTGGTCCAGCAAAGTTTCAACCTAAGAAGGATAATTGGGGATTTAGTAGCAGTGGACATTTCTGGGATGGTGACAAAATTGCAAGTGATTATATAGCAACAAATGTATCCATACTCAAAATGAACTACTCTGAATTGTACACAACTGCACGTCTTTCTCCTCTGTCACTCACTTACTATGGACGCTGCTTAGCGGATGGGAAGTATTCAGTGAAACTTCACTTTGCAGAGATAATAATGAGAGACAATGAATCCTTTCACAGCCTTGGAAGACGCATTTTTGATGTCTACATTCAGGATAAGCTGGAACTAAAGGATTTTGATATTGCACAAGCAGCAAGTGGGGTAGATAAGGTAGTTGTAAAAGAATTTAAAACGTCTGTAAAGAATAAAACTTTAGAGATCCGCTTTCATTGGGCTGGAAAAGGGACAACAGCTGTTCCAACAAGAGCAACTTATGGTCCCCTCATATCAGCTATTTCTGTGGAATCCGACTTCCCGATTCCTTCTGAAGGCAAGAGGAAGAAGATACTTATTGGATCTCTGGCTTTGGCATTAGTTCTCATTCTCATAATTTCAGGCATTGCTTGCTGGAAATGCTACTTTGGAGGCAAAAGCTCAACAGAACAAGATTTGAGAAGATTAGATCTGCAAACTGGTTTATTTACCTTAAGACAGATCAAAGCCGCTACTAACAACTTCAATGCTGCAAATAAGATTGGGGAAGGAGGTTTTGGACCTGTCTACAAGGGCCAACTATCGAATGGCACTCTCATTGCAGTGAAGCAGCTCTCTTCCAAGTCAAGACAAGGGAACCGTGAATTTGTGAATGAGATTGGCATAATTTCTGGTTTGCAACACCCGAATCTTGTAAAACTTTATGGATGTTGTATTGAAAGAACTCAATTGCTGCTGGTGTATGAGTACATGGAAAATAATTCTCTCGCACGTGCTCTTTTTGGTGCAGAAACAAGTGTTCCAATATTGGATTGGGCAACAAGGCAAAAGATATGCATTGGATTAGCTAGAGGTCTAGCATTTCTCCATGAAGAATCAACTCTCAAGATTGTTCACAGGGACATCAAAGCTGCAAATGTACTGCTTGATGGTGATCTAAAAGCTAAGATATCAGACTTTGGATTAGCTAAACTTAATGAAGAGGAGAACACCCACATTAGCACTCGGATTGCTGGAACCAGAGGATACATGGCTCCAGAATATGCACTCTGGGGACATCTAACAGATAAGGCAGACATTTACAGCTTTGGGGTGGTAGCTTTAGAAATTGTCAGTGGGAAGAACAACTCAAGTCGCAAGCCGGAAAACGAATGTGTTTGTCTTCTTGACAGGGCCTTTGCTTTGCAACAAAAAGGAAGCTTAATGGAGATAGTGGATCCAAAGTTAGGATCTGAATTCAACCGGGATGAGGCTGAGAGGATGATTAAAGTAGCTATCTTATGCACCAATGCATCTCCTACACTAAGGCCTATTATGTCAGCTGTGGTAAGCATGCTTGAAGGACAAACCATCGTTCCGGAAGTGATCTCAGATGCTAGCATGGATGAGGATTATTTGAATTTTAAATCACTCGGAGACTATCATAAACGGATGCAAAAGCAGATTTTAAGTGGAAGTGAGGCTTCAAAATTTTCATCAGATGGGACAATAGCTACTGGTTCTTCCTCTACATCTGCACAAGATCTCTATAAAAACAATCCTGATTCCATTAATTTCAGCGACAGTTCTTCCTTGTTGTCACCTCAAAATTCTTGA 2016 0.4043 MNDMFVCSQIDLSYNNFSEQSAPSCRDSLNLFRSFSGGKNLELGGCQKDFPCSKDHYSLHINCGGEETRSGNIVYEEDKDEGGPAKFQPKKDNWGFSSSGHFWDGDKIASDYIATNVSILKMNYSELYTTARLSPLSLTYYGRCLADGKYSVKLHFAEIIMRDNESFHSLGRRIFDVYIQDKLELKDFDIAQAASGVDKVVVKEFKTSVKNKTLEIRFHWAGKGTTAVPTRATYGPLISAISVESDFPIPSEGKRKKILIGSLALALVLILIISGIACWKCYFGGKSSTEQDLRRLDLQTGLFTLRQIKAATNNFNAANKIGEGGFGPVYKGQLSNGTLIAVKQLSSKSRQGNREFVNEIGIISGLQHPNLVKLYGCCIERTQLLLVYEYMENNSLARALFGAETSVPILDWATRQKICIGLARGLAFLHEESTLKIVHRDIKAANVLLDGDLKAKISDFGLAKLNEEENTHISTRIAGTRGYMAPEYALWGHLTDKADIYSFGVVALEIVSGKNNSSRKPENECVCLLDRAFALQQKGSLMEIVDPKLGSEFNRDEAERMIKVAILCTNASPTLRPIMSAVVSMLEGQTIVPEVISDASMDEDYLNFKSLGDYHKRMQKQILSGSEASKFSSDGTIATGSSSTSAQDLYKNNPDSINFSDSSSLLSPQNS* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0340 671 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 284 390 - -
Vvi10g0340 671 Gene3D - 53 246 - -
Vvi10g0340 671 FunFam Putative LRR receptor-like serine/threonine-protein kinase 391 598 - -
Vvi10g0340 671 CDD STKc_IRAK 321 588 - -
Vvi10g0340 671 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 7 616 - -
Vvi10g0340 671 Pfam Malectin domain 58 241 IPR021720 -
Vvi10g0340 671 Pfam Protein kinase domain 317 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0340 671 Gene3D Transferase(Phosphotransferase) domain 1 391 601 - -
Vvi10g0340 671 SMART serkin_6 315 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0340 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 437 449 IPR008271 GO:0004672|GO:0006468
Vvi10g0340 671 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 56 246 - -
Vvi10g0340 671 ProSiteProfiles Protein kinase domain profile. 315 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0340 671 Gene3D Phosphorylase Kinase; domain 1 283 390 - -
Vvi10g0340 671 SUPERFAMILY Protein kinase-like (PK-like) 298 590 IPR011009 -
Vvi10g0340 671 MobiDBLite consensus disorder prediction 625 671 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0340 Vvi-Chr10 3609078 3616001 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0340 9 614 Receptor kinase-like Gene Family AT1G07650 55.591 0.0 664
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi10g0340 Pkinase 9.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0340 - - vvi:100261690 1258.05