LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi10g0338	ATGAAGTTTCTGCGTTCTATGAGCCTTGAAGCTAACCGGTTGTCTGGAAATATTCCTGCGGAGCTTGGGAATTTGGTCAACTTAACAGTGCTAATACTTTCATCCAATAAGTTTGTTGGAAACTTGCCAGAAAAACTTGCTGCGATGAAAAACTTGACTGATTTTAGGATAAGTGGTAACAACTTTAGTGGAAGCATACCTCAATTCATTGGCAACTGGACTCGACTCAAAAGGCTAGAACTATATGCGACTGGACTGGAAGGACCCATCCCCAATGGCATTTTTCATTTGGAAGCTTTGAATGACCTGAGGATCACTGATATGAATGGGGCAAACTTTTTTCCTGAATATCTGCCTCACAAGGACTACATGAAAAACTTGTATGTTAAATACTCCCCTTATGATGTCAGCTTGAACAGATTGAAAGGGAATTTCCCAAGCATTCCACATGTACCAGAATTCACCTTTTTGGGTGGCAACATGCTATCTGGAACTGTACCGGACTCAATCTTAGATGAAGATAAATATATAAACATAAATTTCTATGGGTGCTCGTCTCAGACTGCCTCGTATGAGTATCACTCATTCCATATAAACTGTGGGGGAGAAAATGTAACCATTACGGATAATTCTGGGAAATTCTCCTATGACGGAGATGATTATGTAGGAAGTGCATCAACAAATTATGTCAGTGGCTCAAATTGGGGATATAGCAGCACAGGCGTCTACATGGATAATGATAAGAAAGCTCCCATGTTTACCATATCTAACTCCTCTAAGCTTTCAATGGATTGCTCAGAGTTATATATGACGGCACGTAGAGCTCCCACCTCCCTCATCTATTATGGATTTTGTCTAGAAAATGGGGAATACACTGTGAGACTCCACTTTGCAGAGATAGAAATTACAGATAATGAAGCGTATCGTAGTCTTGGACAGCGCATATTTGACATTTATATTCAGGGGAAGTTAGAATGGAAGGATTTCAATATCATGGAAGAAGCAAACGGAACTGGTAAACCAGTCACAAAACAAATTAATGTTGCTGTGACTGATAATATGCTAGAGATCCGCTTGTATTGGGCAGGGAAAGGGACTACATCCATTCCTAAGAAAGGAACATATGGTCCTCTTATATCTGCTATTTCTGCATGTCACAGTTCTGTACCTTGTGCAGAAAGTCCCCTCTTGGTGAGCACAAAAGCGAGCAAGAAGAGAAAATTTTCCGTCATTGTTGGAGCTGTCACTTCACTGTTATGCCTGATTTTATTTGTTCTGGGTGTCCTTTGTTGGCGACACTATTTGGGTGACAAAAACACAAGGGAAAGAGAACTTAGAGGGCTGGATCTGCAAATAGGTTCCTTTACTTTGAGACAAATAAAAGCTGCGACGAACAACTTTGATTCTGCAAACAAGATTGGAGAAGGTGGTTTTGGATCTGTATTCAAGGGTCAACTATCAGATGGCACTCTTATTGCAGTGAAGCAGCTCTCTTCTAAGTCAAGGCAAGGGTACCGTGAATTTGTGAATGAGATTGGCTTGATTTCTGCTTTGCAACACCCAAATCTTGTGAAGCTTTATGGATGCTGTACTGAAGGAAACCAATTACTGCTGGTGTATGAGTACATGGAAAATAATTCTCTTGCTTATGCTCTTTTTGACAAAAATGATGCAAAAACAAGTGCTTTAAAACTGGACTGGGCAACAAGACAAAAGATATGTGTTGGGATAGCCAGAGGCATAGCATTTCTCCAGGAAGAATCAACTCTCAAGATTGTTCACAGGGATATCAAAGCTACAAATGTACTGCTTGATGAGGATCTAAATGCTAAGATATCAGACTTTGGATTAGCTAGGCTTAATGGAGAGGAGAGCACCCACATTAGCACTCGAGTTGCTGGAACCATAGGATACATGGCTCCTGAATATGCACTCTGGGGATATCTGACAAATAAGGCAGACATTTACAGCTTTGGGGTGGTTGCTTTAGAAATTGTCAGTGGGAAGAACAACACAAGTTACAAGCCAGAAAACGAATGTGTTTGTCTTCTTGATTTGGCCTTTGTTTTGCAACAAAGAGGTAGCTTAATGGAGATAGTAGATCCAAAGTTAGGGTCTGAATTCAACCAGGATGAGGCTGAAAGGATGATTAAAGTAGCTCTCTTGTGCACCAATGCATCTCCTACACTAAGGCCTACTATGTCAGCAGTGGTAAGCATGCTTGAAGGACAAACTGTTGTTCAGGATGTGATTTCAGATCCTGGCATCTACAATGATGATTTAAGATTTAGACCCCTCAGAGACCAACAGCAACAGATGCAAAATCAGAGTTTAAGTAGAAGCCAGCCTCCTAATCTGCCATCAGATGGAATATAG	2376	0.4078	MKFLRSMSLEANRLSGNIPAELGNLVNLTVLILSSNKFVGNLPEKLAAMKNLTDFRISGNNFSGSIPQFIGNWTRLKRLELYATGLEGPIPNGIFHLEALNDLRITDMNGANFFPEYLPHKDYMKNLYVKYSPYDVSLNRLKGNFPSIPHVPEFTFLGGNMLSGTVPDSILDEDKYININFYGCSSQTASYEYHSFHINCGGENVTITDNSGKFSYDGDDYVGSASTNYVSGSNWGYSSTGVYMDNDKKAPMFTISNSSKLSMDCSELYMTARRAPTSLIYYGFCLENGEYTVRLHFAEIEITDNEAYRSLGQRIFDIYIQGKLEWKDFNIMEEANGTGKPVTKQINVAVTDNMLEIRLYWAGKGTTSIPKKGTYGPLISAISACHSSVPCAESPLLVSTKASKKRKFSVIVGAVTSLLCLILFVLGVLCWRHYLGDKNTRERELRGLDLQIGSFTLRQIKAATNNFDSANKIGEGGFGSVFKGQLSDGTLIAVKQLSSKSRQGYREFVNEIGLISALQHPNLVKLYGCCTEGNQLLLVYEYMENNSLAYALFDKNDAKTSALKLDWATRQKICVGIARGIAFLQEESTLKIVHRDIKATNVLLDEDLNAKISDFGLARLNGEESTHISTRVAGTIGYMAPEYALWGYLTNKADIYSFGVVALEIVSGKNNTSYKPENECVCLLDLAFVLQQRGSLMEIVDPKLGSEFNQDEAERMIKVALLCTNASPTLRPTMSAVVSMLEGQTVVQDVISDPGIYNDDLRFRPLRDQQQQMQNQSLSRSQPPNLPSDGI*	792

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi10g0338	791	MobiDBLite	consensus disorder prediction	768	791	-	-
	Vvi10g0338	791	Gene3D	Transferase(Phosphotransferase) domain 1	543	753	-	-
	Vvi10g0338	791	ProSitePatterns	Protein kinases ATP-binding region signature.	473	495	IPR017441	GO:0005524
	Vvi10g0338	791	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	592	604	IPR008271	GO:0004672\|GO:0006468
	Vvi10g0338	791	Gene3D	-	193	388	-	-
	Vvi10g0338	791	Pfam	Protein tyrosine and serine/threonine kinase	470	741	IPR001245	GO:0004672\|GO:0006468
	Vvi10g0338	791	Gene3D	Phosphorylase Kinase; domain 1	433	542	-	-
	Vvi10g0338	791	CDD	STKc_IRAK	473	743	-	-
	Vvi10g0338	791	FunFam	probable LRR receptor-like serine/threonine-protein kinase At1g53430	436	542	-	-
	Vvi10g0338	791	Pfam	Malectin domain	195	382	IPR021720	-
	Vvi10g0338	791	SUPERFAMILY	Protein kinase-like (PK-like)	451	744	IPR011009	-
	Vvi10g0338	791	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	4	777	-	-
	Vvi10g0338	791	SUPERFAMILY	L domain-like	2	172	-	-
	Vvi10g0338	791	ProSiteProfiles	Protein kinase domain profile.	467	747	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi10g0338	791	FunFam	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase	193	387	-	-
	Vvi10g0338	791	FunFam	Putative LRR receptor-like serine/threonine-protein kinase isoform A	42	109	-	-
	Vvi10g0338	791	Gene3D	Ribonuclease Inhibitor	1	183	IPR032675	-
	Vvi10g0338	791	SMART	serkin_6	467	741	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi10g0338	791	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	543	753	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi10g0338	Vvi-Chr10	3582587	3594941	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi10g0338	4	764	Receptor kinase-like Gene Family	AT1G29740	53.301	0.0	808

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vvi10g0338		PK_Tyr_Ser-Thr	3.4e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi10g0338	-		-	vvi:100256593	1518.44