Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0337 ATGTTGAAGCCATGCAACTTGCTTAATGGAAATATTCCAGACGGGATCAAGAGCAGAGAAAGTCGCTCCCAAATAGATCTTTCTTACAATAACTTCTCTGAGAAATCTGCACCACCTGCTTGTCGAGATAGCTTGAACTTGTTTAGAAGCTTTTCTGGGGGGAAAAACTTAGAACTTGGTGGGTGCCTGGAAAGCTATCCTTGTTCAAAAGATCGATATTCATTGCATATAAATTGTGGGGGAGCGGAAACAACCATCGGAAACATTGTTTATCAAGGGGATCAATATGAAGGAGGTGCTGCAAAGTTTCATCCCATGAGTGATAATTGGGGGTTTAGTAGCACTGGACACTTCTGGGACCATAGCATCTCCATAAACGATTATATAGCACAAAATGTATCTGTACTCAGAATGAACAACTCTGGGTTATACACCAGAGCACGCCTTTCTCCTCTATCTCTCACTTATTATGGACGCTGCTTAGCGAATGGGAACTATACAGTGAAGCTTCACTTTGCAGAAATAATTTTTAGAAGCAATAGATCTTTCTATAGTCTGGGAAGACGGATTTTTGATGTTTATATACAGGACAAGCTGGAATTGAAGGATTTTGATATTGAACATGCAGCAAGAGGAGTCGATAAGACAATTGTAAAAGAATTTAAAGCAGTTGTTAGAAATAAAACTTTAGAAATCCGTTTTTATTGGGCTGGGAAGGGGACAACAGCTTTGCCATCAAGAGGAACTTATGGTCCTCTCATATCAGCTATTTCTGTAGAATCCGACTTCAAGCCTCCTTCTCATGGCAACATGAAGACACTCATTGGAGCTCTAGGTTTGCTGTTGATCCTCATTTTCACAGTTTTAGGCATTATTTGGTGGAAATGCTACTTCAAAGGAAAATCCCCAATCGAAGAGTTGAGAGGATTAGATCTGCAGACTGGCTTTTTTACTTTGCGACAAATTAAAGCTGCTACTAACAACTTTGATGCTGCAAACAAGCTTGGGGAAGGAGGTTTTGGATCTGTATATAAGGGTACATTGTTAGATGGTACCATAATTGCAGTGAAGCAACTTTCTTCCAAATCGAAGCAAGGAAATCGTGAATTTGTGAATGAGATAGGAATGATATCTGGTTTACAACACCCGAATCTTGTGAGATTATATGGATGCTGTATTGAAGCAAATCAACTATTGTTGGTATATGAATACATGGAGAACAATAGCCTTGCCCGTGCTTTATTTGGTAGAGAGGAATTCCAATTGAAATTGGACTGGCCCACCAGACAGAGGATTTGTGTTGGCATAGCAAAAGGTTTGGCTTTCCTGCACGAGGAATCAGCATTGAAAATTGTTCATAGGGACATCAAAACAAACAATATACTTCTCGATAGGGACCTTAACCCTAAGATATCTGACTTTGGTTTGGCCAAGCTTGATGAAGAAGAGAACACCCACATTAGCACCAGAGTTGCTGGAACTATAGGATATATGGCACCAGAGTATGCGCTCTGGGGTTATTTAACCTATAAAGCAGATGTTTACAGCTTTGGAGTCGTTGCATTGGAAATTGTTGCTGGGAAGAACAACATGAAATATAGACCAAACGAGGACTATTTTTCTCTTTTAGATTGGGCCTTTTTTCTACAACAAAAAGGAAATCTGATGGAGTTGGTGGATCCAAAGTTGGAGTCTGATTTCAACAAGGAAGAGGTCTTAAGAATGATTAAAATATCTCTATTATGCACCAATCCATCCCCGGCACTTAGGCCTACCATGTCTGCAGTGGTGAATATGCTTGAAGGTCGGGCTCCTGTTCAGGAATTCCCCTTGAATCCAATTATTTTTGGTGATGAAGCCCTCAGAAGCCAGTATAGTCAGATGCATTTCCACAGATCAAGTGAAACTGAGACCATCAAGCATTCATCTGATTCAACAGGCATTGGATCTCCCTCTACATCAACGCGTGATCTCCATCAAATCAATCCTGACTCATTAATGTAG 2004 0.4032 MLKPCNLLNGNIPDGIKSRESRSQIDLSYNNFSEKSAPPACRDSLNLFRSFSGGKNLELGGCLESYPCSKDRYSLHINCGGAETTIGNIVYQGDQYEGGAAKFHPMSDNWGFSSTGHFWDHSISINDYIAQNVSVLRMNNSGLYTRARLSPLSLTYYGRCLANGNYTVKLHFAEIIFRSNRSFYSLGRRIFDVYIQDKLELKDFDIEHAARGVDKTIVKEFKAVVRNKTLEIRFYWAGKGTTALPSRGTYGPLISAISVESDFKPPSHGNMKTLIGALGLLLILIFTVLGIIWWKCYFKGKSPIEELRGLDLQTGFFTLRQIKAATNNFDAANKLGEGGFGSVYKGTLLDGTIIAVKQLSSKSKQGNREFVNEIGMISGLQHPNLVRLYGCCIEANQLLLVYEYMENNSLARALFGREEFQLKLDWPTRQRICVGIAKGLAFLHEESALKIVHRDIKTNNILLDRDLNPKISDFGLAKLDEEENTHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEIVAGKNNMKYRPNEDYFSLLDWAFFLQQKGNLMELVDPKLESDFNKEEVLRMIKISLLCTNPSPALRPTMSAVVNMLEGRAPVQEFPLNPIIFGDEALRSQYSQMHFHRSSETETIKHSSDSTGIGSPSTSTRDLHQINPDSLM* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0337 667 Pfam Malectin domain 74 257 IPR021720 -
Vvi10g0337 667 Gene3D Phosphorylase Kinase; domain 1 300 404 - -
Vvi10g0337 667 Pfam Protein kinase domain 332 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0337 667 FunFam Putative LRR receptor-like serine/threonine-protein kinase 405 612 - -
Vvi10g0337 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672|GO:0006468
Vvi10g0337 667 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 299 404 - -
Vvi10g0337 667 ProSiteProfiles Protein kinase domain profile. 329 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0337 667 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 72 262 - -
Vvi10g0337 667 CDD STKc_IRAK 335 602 - -
Vvi10g0337 667 Gene3D - 69 262 - -
Vvi10g0337 667 SUPERFAMILY Protein kinase-like (PK-like) 313 626 IPR011009 -
Vvi10g0337 667 MobiDBLite consensus disorder prediction 632 667 - -
Vvi10g0337 667 Gene3D Transferase(Phosphotransferase) domain 1 405 609 - -
Vvi10g0337 667 SMART serkin_6 329 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0337 667 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 6 636 - -
Vvi10g0337 667 MobiDBLite consensus disorder prediction 640 667 - -
Vvi10g0337 667 ProSitePatterns Protein kinases ATP-binding region signature. 335 357 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0337 Vvi-Chr10 3571477 3577958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0337 6 633 Receptor kinase-like Gene Family AT1G07650 56.250 0.0 715
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi10g0337 Pkinase 3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0337 - - vvi:100251456 1322.76