Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0335 ATGGCTACTTTTCCAGATATTCAGAAGCCTCTCTTCTTCGCTTTCATTCTCATATGGCTCATACTGATGTGCTTTGGCTCCAAAGCCCAAGGTGGTCGGCTTCCTGACGATGAAGTGGAGGCTCTCCATGAAATAGCAGAACAAGTGGGGAAAAAAGATTGGGACTTCAGCCTAAACCCTTGTGATGGCAACGCCAACTGGTCAACACCTAAAAGGAAGGAAATGCCCTTGTATAACAATACTCTCACCTGCAATTGCTCCTATCCCAACGGTCAATGCCACGTCGTTCAGATATTTCTCAAAGGGCAGGATCTTGCTGGTGTGCTTCCCCCCTCTCTGGAAAAACTGCCTTACCTTAAGATGATTGATTTCACTAGGAACTATCTTAGTGGTAACATACCGCATGAATGGGCTTCTATGCAATTAGAATATCTGTCACTTACTGTGAACAGATTATCGGGACCAATACCTAGCTTCTTGGGAAATATTACTACTCTGAGATATATGAGTTTGGAGAGCAACCTATTCTCTGGAACTGTTCCTCACCAGCTTTGGCAACTAGTCAACCTGGAAAATCTCATTCTTAACACTAACAATCTCACTGGGGAGTTGCCTCCAACACTTGCTAATCTAACCAAATTAACAGAATTTCGGATTAGTAGCAACAATTTCACTGGAAAAATACCCAATTTTATTCATAGTTGGAAACAACTTCAGAAATTAGAGATCCAAGCAAGTGGTCTTGAAGGGCCCATACCTTTTAGCATTTCTGTCTTGAAGAATTTAACTGAATTAAGGATTAGTGATTTACCTGGGGAAGGCTCAAATTTTCCATCTCTAGGAAACATGACAGGCATGAAAAGGCTGATGTTGAAAGGCTGTAATATCTTCGGATCAATCCCCAAAGATTTAGCAAAGATGACAGAACTGCAAATTTTAGACCTTAGCTTCAACAAGCTGGAAGGAACTGTTCCAAACCTGGAAGATTTAACAAAAATGGAGCTCATGTATTTGACAAGCAACTTGCTTAATGGGCCTATTCCGGACTGGATCAAGAGCAGAGATAATCGCTACCAAATTGATATTTCTTATAATAACTTTTCTGAGCCCTCTGTGCCATCTACTTGTGGAGAAAGCTTGAACTTGTTCCGAAGCTTTTCTGAGAGGGGAAAATTAGAACTTGGTAAGTGCCTGAATAGTTTTCCATGTTCCAAAGATCGGTATTCACTGCATATAAATTGTGGTGGAGAAGGAACCACCATTGGAGACGTAGTCTATGAAGCGGATGACGATTTAGCAGGTCCATCCGAGTTTAACCCCATCAGAGATAATTGGGGTTTTAGTAGCACAGGACACTTTTGGGATCAAAACAGAACCTCAAAGGATTATATAGCACAGAATGTATCCATGCTCAGGATGAATGACTCTGAATTGTACAAAAGAGCACGACTTTCTCCTCTGTCTTTCACTTACTATGGACGCTGCTTAGCAGATGGGAACTATACTGTGAAACTTCATTTTGCAGAGATAGTGATAAGAGACAATAAATCCTTTCACAGTCTTGGAAGACGTATTTTTGATGTTTACATCCAGGAAAAGCTGGAGTTGAAAGATTTTAACATTGTACAAGCAGCACAAGGGGTTGATAAGGCATTTGTAAAAGAATTTAAAGCAGTTGTAAAGAACAAAACTTTAGAGATCCGATTTCATTGGGCTGGGAAAGGTACAACTGCTGCCCCAAAGAGAGGAACTTATGGTCCTCTCATATCAGCCATTTCTGTAAAAGCTGATTTTGAGCCTCCTTCTGATGTAAAAAAGAAGATATTCATTGTGGTTGGGGCTGTGGCTGTGGCTTTGGTATTATTCCTTGTTTTTGGTATTCTTTGGTGGAAAGTTTGTTTTGGAGGCAGAATCTCCCGGGAACAAGAATTGAGAGGATTAGATCTGCAAACTGGTTTATTTACCTTGAGACAAATTAAAGCTGCTACCAACAACTTTGATGCTGCAAACAAGATTGGAGAAGGAGGTTTTGGATCAGTCTACAAGGGTACACTATTAGATGGAACCATAATTGCAGTGAAGCAACTTTCTTCGAAATCAAGTCAAGGAAATCGTGAATTTGTAAATGAAATAGGAATGATATCCGGTTTACAACATCCGAATCTTGTAAGATTATATGGATGTTGCATTGAAGGGAATCAACTGCTGTTGGTATATGAATACATGGAGAACAATTGCCTTGCCCGTGCTTTATTTGGTGGAGGAGAAATCCAATTGCAATTAGATTGGCCTACCAGGCAAAGGATTTGTATTGGCATAGCAAAAGGTTTGGCTTTCCTGCATGAGGAATCGACACTGAAAATTGTTCATAGAGACATCAAGGCAACCAATGTACTTCTGGATAGGGAGCTTAACCCCAAGATCTCTGACTTTGGTCTGGCCAAGCTTGATGAAGAAGGAAACACCCACATTAGCACTAGAATTGCTGGAACTATAGGATACATGGCACCCGAGTATGCATTATGGGGTTATTTAACCTATAAAGCAGATGTATACAGTTTTGGAGTTGTTGCTTTGGAAATTGTTGCTGGGAAGAACAACATGAAATATAAGCCAAATGAAGATTATGTGTGTCTTCTGGACTGGGCATTTGTTTTACAACAAAAAGGAAATTTAATGGAGCTTGTGGATCCAAAGTTAGGGGCTGATCTCAACAAGGAAGAGGCAAAAATAATGATTAAAGTAGCTTTACTTTGCACCAATCCATCCCCGGCACTCAGGCCTACCATGTCTGCTGTAGTGAGCATGCTGAAAGGACAAACTGTTGTTCCAGAAGTACTGATCATGGATCCGAGTTCTTATAGTGATCACTTGAAGTTCAATGCTCTCAGAGGTCAGTATGATCAGATGCAACTTGAGAGCCATAGTGTCAGTGGGCCACTCAACAAGTCATTGGATTCAACAACGAAGGGATCTTCCTCCACATCTTCTCAGGATCTATATCAAATCAATCTTGACTCGCATTAA 3027 0.4067 MATFPDIQKPLFFAFILIWLILMCFGSKAQGGRLPDDEVEALHEIAEQVGKKDWDFSLNPCDGNANWSTPKRKEMPLYNNTLTCNCSYPNGQCHVVQIFLKGQDLAGVLPPSLEKLPYLKMIDFTRNYLSGNIPHEWASMQLEYLSLTVNRLSGPIPSFLGNITTLRYMSLESNLFSGTVPHQLWQLVNLENLILNTNNLTGELPPTLANLTKLTEFRISSNNFTGKIPNFIHSWKQLQKLEIQASGLEGPIPFSISVLKNLTELRISDLPGEGSNFPSLGNMTGMKRLMLKGCNIFGSIPKDLAKMTELQILDLSFNKLEGTVPNLEDLTKMELMYLTSNLLNGPIPDWIKSRDNRYQIDISYNNFSEPSVPSTCGESLNLFRSFSERGKLELGKCLNSFPCSKDRYSLHINCGGEGTTIGDVVYEADDDLAGPSEFNPIRDNWGFSSTGHFWDQNRTSKDYIAQNVSMLRMNDSELYKRARLSPLSFTYYGRCLADGNYTVKLHFAEIVIRDNKSFHSLGRRIFDVYIQEKLELKDFNIVQAAQGVDKAFVKEFKAVVKNKTLEIRFHWAGKGTTAAPKRGTYGPLISAISVKADFEPPSDVKKKIFIVVGAVAVALVLFLVFGILWWKVCFGGRISREQELRGLDLQTGLFTLRQIKAATNNFDAANKIGEGGFGSVYKGTLLDGTIIAVKQLSSKSSQGNREFVNEIGMISGLQHPNLVRLYGCCIEGNQLLLVYEYMENNCLARALFGGGEIQLQLDWPTRQRICIGIAKGLAFLHEESTLKIVHRDIKATNVLLDRELNPKISDFGLAKLDEEGNTHISTRIAGTIGYMAPEYALWGYLTYKADVYSFGVVALEIVAGKNNMKYKPNEDYVCLLDWAFVLQQKGNLMELVDPKLGADLNKEEAKIMIKVALLCTNPSPALRPTMSAVVSMLKGQTVVPEVLIMDPSSYSDHLKFNALRGQYDQMQLESHSVSGPLNKSLDSTTKGSSSTSSQDLYQINLDSH* 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0335 1008 Gene3D Ribonuclease Inhibitor 273 388 IPR032675 -
Vvi10g0335 1008 Gene3D Phosphorylase Kinase; domain 1 637 741 - -
Vvi10g0335 1008 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 18 976 - -
Vvi10g0335 1008 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 407 597 - -
Vvi10g0335 1008 Pfam Protein tyrosine and serine/threonine kinase 669 937 IPR001245 GO:0004672|GO:0006468
Vvi10g0335 1008 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 40 204 - -
Vvi10g0335 1008 ProSitePatterns Protein kinases ATP-binding region signature. 672 694 IPR017441 GO:0005524
Vvi10g0335 1008 Gene3D - 404 597 - -
Vvi10g0335 1008 CDD STKc_IRAK 672 939 - -
Vvi10g0335 1008 Pfam Malectin domain 409 592 IPR021720 -
Vvi10g0335 1008 Gene3D Ribonuclease Inhibitor 35 272 IPR032675 -
Vvi10g0335 1008 ProSiteProfiles Leucine-rich repeat profile. 309 331 IPR001611 GO:0005515
Vvi10g0335 1008 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 636 741 - -
Vvi10g0335 1008 SUPERFAMILY L domain-like 85 368 - -
Vvi10g0335 1008 ProSiteProfiles Protein kinase domain profile. 666 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0335 1008 SUPERFAMILY Protein kinase-like (PK-like) 650 938 IPR011009 -
Vvi10g0335 1008 SMART serkin_6 666 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0335 1008 MobiDBLite consensus disorder prediction 975 1008 - -
Vvi10g0335 1008 FunFam Putative LRR receptor-like serine/threonine-protein kinase 742 949 - -
Vvi10g0335 1008 ProSitePatterns Serine/Threonine protein kinases active-site signature. 788 800 IPR008271 GO:0004672|GO:0006468
Vvi10g0335 1008 Gene3D Transferase(Phosphotransferase) domain 1 742 947 - -
Vvi10g0335 1008 FunFam Leucine-rich repeat transmembrane protein kinase 207 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0335 Vvi-Chr10 3527450 3539950 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0335 15 976 Receptor kinase-like Gene Family AT1G53440 51.329 0.0 928
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi10g0335 PK_Tyr_Ser-Thr 1.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0335 - - vvi:100241193 1971.05