Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0333 ATGGCAACTCCAACTGGTCCACACCTAACAGGAAGGAAATGCCATTGTATAACAATACTCTCACCTGCAATTGCTCCTATCCCAACGGGGTGGGGATGGGGATGGGGATGGGGATGTGATTTCACTAGGAACTATCTTAGTGGTAACATACCGCGTGAATGGGCTTCTTTGCAATTAGAATATATGTCACTCACTGTGAACAAGTTATCAGGACCAATACCAAGCTTCTTGGGAAACATTTCTACTCTGAGATATATGAGTATGGAGAGCAACATGTTCTCTGGAACTGTTCCTCCTCAGCTTGGGCAACTGGTCAACTTGGAAAATCTCATTCTTAACACTAACAATCTCACTGGGGAGTTGCCTCCAGCACTTGCTAATCTAACCAAATTAACAGAATTTCGGATTAGTAGCAACAATTTCAGTGGAAAAATTCCCAATTTTATTCATAGTTGGAAACAACTTCAGAAATTAGAGATCCAAGCAAGTGGTCTTGAAGGGCCCATACCTTCTAGCATTTCTGTCTTGACGAATTTAACTGAATTAAGGATTAGTGATTTACTTGGGGAAGGCTCAAATTTTCCGCCTCTAGGAAACATGAAAGGCCTGAAAAAGCTGATGTTGAGAGGTTGTAATATCTCCGGATCAATCCCCAAATATTTAGCAGAGATGACAGAACTGCAAATTTTAGACCTTAGCTTCAACAAGCTGGAAGGAATTGTTCCAAACCTGGAAGGTTTAACACAAATAGAATTCATAGAATTTGATGAGTGCCTGGACAGTTTTCCATGTCTCAAAGATCAGTATTCACTGCATATAAATTGTGGTGGAGGAAGAACCATCATTGGAGACATAGTCTATGAAGCGGATGAAGACTTAGCAGGTCCATCCAAGTTTGTCCCCACTAGAGATAATTGGGGTTTTAGTAGCACAGGAGACTTTTGGGATCGTGACAGAACCACAAAAAATTATATAGCACATAATGTATCCATGCTCGGGATGAATGACTCTGAATTGTACACAAGAGCACGACTTTCTCCTCTATCTTACACTTACTATGGACGCTGCTTAGCAGATGGGAACTATACTGTGAAACTTCATTTTGCAGAGATAGTGATCAGAGGCAATAAATCCTTTCATAGTCTTGGAAGACGTATTTTTGATGTTTACATCCAGGAAAAGCTGGAGTTGCAAGATTTTAATATTGTACAAGCAGCACAAGGGGTTGATAAGGTAGTTGTAAGAGAATTTAAAGCAGTCGTAAGGAATAAGACTTTGGACATCCGATTTCATTGGGCTGGGAAAGGTACAACAGCTGCCCCAGAGGGAGGAACTTATGGTCCTCTCATATCAGCCATTTCTGTAAAAGCTGATTTTGAGCCACCTTCTGATGGAAAAAAGAAGATATTCATTGCAGTTGGGGCTGTGGCTGTGGCTTTGGTGTTATTCCTTATTTTAGGTATTCTTTGGTGGAAAGTTTGTTTTGGTGGCAGAATCTCCCGGGAACAAGAGTTGAGAGGATTAGATCTGCAAACTGGTTTATTTACCTTGAGACAAATTAAAGCTGCTACAAACAGCTTTGATGCTGCAAACAAGATTGGGGAAGGAGGTCAAGTGGAATACCAATTAAATTTGGACTGGTCCACGAGGCAGAGGATTTGTGTTGGCATAGCAAGAGGTTTGGCTTTCCTGCATGAAGGATCAACACTGAAAATTGTTCATAGAGACATAAAAGCAAATAACATACTACTTGATACGAATCTTAACCCTAAGATCTCTGATTTTGGTCTGGCAAAACTTGATGAAGAAGACAACACCCATATTAGCACCAGAGTTGCTGGAACCATAGGATACATGGCACCAGAGTATGCATTATGGGGTTATTTAACCTATAAAGCCGATGTATACAGTTTTGGGGTTGTTGCTTTGGAACTTGTTGCAGGGAAGAACAACATGAAATATAGACCAAATGAGGATTGCTTTTGTCTTCTAGATTGGGCCTTTGTTTTACAACAAAAAGGAAATTTAATGGAGCTAGTGGATCCAAAGTTGGGGACTGAGTTCAAAAAGGACGAAGCCATAAGGATGATCAAAGTTGCCCTATTATGCACCAATCCATCTCCAGCACTTAGACCTACCATGTCTGCAGTGGTGAGCATGCTCAAAGGTCAAACTGTCATTCAGGAATACCCCCTGAATCCTAGTATTTATGGTGATGAATTTGGGTTTGAAGCCCTCAGAGGCCAGTATGACCAGATGCAATTACAGAGCTCAAGCGACATTGAGCCCCTCAATCATTCATCACATACAGCACAGAGTGGATCTTCCTTAACATCTTCCCAAGATCCATAA 2352 0.4107 MATPTGPHLTGRKCHCITILSPAIAPIPTGWGWGWGWGCDFTRNYLSGNIPREWASLQLEYMSLTVNKLSGPIPSFLGNISTLRYMSMESNMFSGTVPPQLGQLVNLENLILNTNNLTGELPPALANLTKLTEFRISSNNFSGKIPNFIHSWKQLQKLEIQASGLEGPIPSSISVLTNLTELRISDLLGEGSNFPPLGNMKGLKKLMLRGCNISGSIPKYLAEMTELQILDLSFNKLEGIVPNLEGLTQIEFIEFDECLDSFPCLKDQYSLHINCGGGRTIIGDIVYEADEDLAGPSKFVPTRDNWGFSSTGDFWDRDRTTKNYIAHNVSMLGMNDSELYTRARLSPLSYTYYGRCLADGNYTVKLHFAEIVIRGNKSFHSLGRRIFDVYIQEKLELQDFNIVQAAQGVDKVVVREFKAVVRNKTLDIRFHWAGKGTTAAPEGGTYGPLISAISVKADFEPPSDGKKKIFIAVGAVAVALVLFLILGILWWKVCFGGRISREQELRGLDLQTGLFTLRQIKAATNSFDAANKIGEGGQVEYQLNLDWSTRQRICVGIARGLAFLHEGSTLKIVHRDIKANNILLDTNLNPKISDFGLAKLDEEDNTHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALELVAGKNNMKYRPNEDCFCLLDWAFVLQQKGNLMELVDPKLGTEFKKDEAIRMIKVALLCTNPSPALRPTMSAVVSMLKGQTVIQEYPLNPSIYGDEFGFEALRGQYDQMQLQSSSDIEPLNHSSHTAQSGSSLTSSQDP* 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0333 783 Pfam Malectin domain 270 453 IPR021720 -
Vvi10g0333 783 ProSitePatterns Serine/Threonine protein kinases active-site signature. 572 584 IPR008271 GO:0004672|GO:0006468
Vvi10g0333 783 SMART serkin_6 465 721 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0333 783 Gene3D Transferase(Phosphotransferase) domain 1 537 731 - -
Vvi10g0333 783 MobiDBLite consensus disorder prediction 756 783 - -
Vvi10g0333 783 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 40 538 - -
Vvi10g0333 783 SUPERFAMILY L domain-like 41 258 - -
Vvi10g0333 783 ProSiteProfiles Leucine-rich repeat profile. 226 248 IPR001611 GO:0005515
Vvi10g0333 783 Pfam Protein kinase domain 545 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0333 783 ProSiteProfiles Protein kinase domain profile. 435 727 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0333 783 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 268 458 - -
Vvi10g0333 783 FunFam Putative LRR receptor-like serine/threonine-protein kinase 525 733 - -
Vvi10g0333 783 FunFam Uncharacterized protein 84 230 - -
Vvi10g0333 783 SUPERFAMILY Protein kinase-like (PK-like) 542 740 IPR011009 -
Vvi10g0333 783 Gene3D - 264 458 - -
Vvi10g0333 783 Gene3D Ribonuclease Inhibitor 33 149 IPR032675 -
Vvi10g0333 783 Gene3D Ribonuclease Inhibitor 150 262 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0333 Vvi-Chr10 3483640 3493434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0333 537 728 Receptor kinase-like Gene Family AT1G53420 63.542 5.99e-78 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi10g0333 Pkinase 3.6e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0333 - - vvi:104880494 895.575