Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0332 ATGGCTACTTTTCCAGATATTCATGGGAAGACTCTCTTCTTTGCTTTTATTCTCACGCTGCTCATACTCATGTGCTTCGGTTCCAGCAGCGTTGAAGCCCAAGGTGGTCAGCTTCCTCGTGATGAAGAGGAGGCTCTAGAAGAAATAGCAGAACAAGTGGGGAAAAAGGATTGGAACTTCAGCCTAAACCCTTGTGATGGCAACTCCAACTGGTCCACACCTAACAGGAAGGAAAAGCCATTGTATAACAATACTCTCACCTGCAATTGCTCCTATCCCAACGGTCAATGCCACGTCGTTCAGATATTTCTCAAAGGGCAAGATCTTGCTGGTGTGCTTCCGCCCTCTCTGGCGAAACTGTCTTACCTTAAGATAATTGATTTCACTAGGAACTATCTTAGTGGTAACATACCGCATGAATGGGCTTCTGTGCAATTAGAATATATGTCACTTACTGTGAACAGGTTATCAGGACCAATACCAAGCTTCTTGGGAAACATTACTACTCTGAGATATATGAGTATGGAGAACAACATGTTCTCTGGAACTGTTCCTCCTCAGCTTGGGCAATTGGTCAACTTGGAAAATCTCATTCTTAACGCTAACAATCTCACTGGGGAGTTGCCTCCAGCACTTGCTAATCTAACCAAATTAACAGAATTTCGGATTAGTAGCAACAATTTCACTGGAAAAATACCCAATTTTATTCCTAGTTGGAAACAACTTCAGAAATTAGAGATCCAAGCAAGTGGTCTTGAAGGGCCCATACCTTCTAGCATTTCTGTCTTGAAGAATTTAACTGAATTAAGGATTAGTGATTTACCTGGGGAAGGCTCAAATTTTCCACCTCTAGGAAACATGAAAGGCCTGCAAAAGCTGATGTTGAGAGGCTGTAATATCTTCGGATCAATCCCCAAATATTTAGCAGAGATGACAGAACTGCAAATTTTAGACCTTAGCTTCAACAAGCTGGAAGGAATTGTTCTAAACCTGGAAGGTTTAACACAAATAGAATTCATCCAAACAGATATTTCTTATAACAACTTTTCTAAAAGCTCTATGCCATCTTCTTGTCGAGAAACCCTGAACTTGTTCCGAAGCTTTTCTGAAAGGGGAAAATTAGAATTTGATGAGTGCCTGAACAGTTTTCCATGTCTCAAAGATCAGTATTCACTGCATATAAATTGTGGTGGAGGAAGAACCATCATTGGAGACATAGTCTATGAAGCGGATGAAGACTTAGCAGGTCCATCCAAGTTTGTCCCCACTAGAGATAATTGGGGTTTTAGTAGCACAGGAGACTTTTGGGATCGTGACAGAACCACAAAAAATTATATAGCACAGAATGTATCCATGCTCGGGATGAATGACTCTGAATTGTACACAAGAGCACGACTTTCTCCTCTATCTTTCACTTACTATGGACGCTGCTTAGCAGATGGGACCTATACTGTGAAACTTCATTTTGCAGAGATAGTGATCAGAGACAATAAATCCTTTCATAGTCTTGGAAGACGTATTTTTGATGTTTACATCCAGGAAAAGCTGGAGTTGCAAGATTTTAATATTGTACAAGCAGCACAAGGGGTTGATAAGGTAGTTGTAAGAGAATTTAAAGCAGTCGTAAGGAATAAGACTTTGGAGATCCGATTTCATTGGGCTGGGAAAGGTACAACAGCTGCCCCAGAGGGAGGAACCTATGGTCCTCTCATATCAGCCATTTCTGTAAAAGCTGATTTTGAGCCGTCTTCTGATGGAAAAAAGAAGATATTCATTGCAGTTGGGGCTGTGGCTTTCATGATATTCCTTATTTTAGGTATTCTTTGGTGGAAAGTTTGTTTTGGTGGCAGAATCTCCCGGGAACAAGATCTCGAAGGACTAGATATGCAAACAGGTTCTTTTACCTTAAAACAAATAAAAGCTGCCACCAAAAATTTTGATTTTGCAAACAAGATTGGAGAAGGAGGTTTTGGTCCAGTTTATAAGGGTCTGTTATCCGATGGTACCATAGTTGCAGTGAAACAGCTTTCCTCTATATCAAGGCAAGGAAATCGTGAATTTTTGAATGAGATAGCCATGATTTCTTGTTTGCAACACCCAAATCTGGTGAAACTTCATGGAAGTTGTGTTGAAGGAGATCAACTGCTACTGGTATACGAGTACATGGAAAACAATAGCCTAGCCGGCGCTCTGTTTGGTAAGTATCATTTACTTAATTTGAATACACTTTCTGTTAAGACAAGTAAAATATAG 2253 0.4035 MATFPDIHGKTLFFAFILTLLILMCFGSSSVEAQGGQLPRDEEEALEEIAEQVGKKDWNFSLNPCDGNSNWSTPNRKEKPLYNNTLTCNCSYPNGQCHVVQIFLKGQDLAGVLPPSLAKLSYLKIIDFTRNYLSGNIPHEWASVQLEYMSLTVNRLSGPIPSFLGNITTLRYMSMENNMFSGTVPPQLGQLVNLENLILNANNLTGELPPALANLTKLTEFRISSNNFTGKIPNFIPSWKQLQKLEIQASGLEGPIPSSISVLKNLTELRISDLPGEGSNFPPLGNMKGLQKLMLRGCNIFGSIPKYLAEMTELQILDLSFNKLEGIVLNLEGLTQIEFIQTDISYNNFSKSSMPSSCRETLNLFRSFSERGKLEFDECLNSFPCLKDQYSLHINCGGGRTIIGDIVYEADEDLAGPSKFVPTRDNWGFSSTGDFWDRDRTTKNYIAQNVSMLGMNDSELYTRARLSPLSFTYYGRCLADGTYTVKLHFAEIVIRDNKSFHSLGRRIFDVYIQEKLELQDFNIVQAAQGVDKVVVREFKAVVRNKTLEIRFHWAGKGTTAAPEGGTYGPLISAISVKADFEPSSDGKKKIFIAVGAVAFMIFLILGILWWKVCFGGRISREQDLEGLDMQTGSFTLKQIKAATKNFDFANKIGEGGFGPVYKGLLSDGTIVAVKQLSSISRQGNREFLNEIAMISCLQHPNLVKLHGSCVEGDQLLLVYEYMENNSLAGALFGKYHLLNLNTLSVKTSKI* 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0332 750 Gene3D Ribonuclease Inhibitor 235 373 IPR032675 -
Vvi10g0332 750 SUPERFAMILY Protein kinase-like (PK-like) 629 736 IPR011009 -
Vvi10g0332 750 Gene3D - 385 579 - -
Vvi10g0332 750 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 209 275 - -
Vvi10g0332 750 SUPERFAMILY L domain-like 82 349 - -
Vvi10g0332 750 ProSiteProfiles Protein kinase domain profile. 646 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0332 750 Gene3D Ribonuclease Inhibitor 39 234 IPR032675 -
Vvi10g0332 750 Pfam Protein tyrosine and serine/threonine kinase 648 732 IPR001245 GO:0004672|GO:0006468
Vvi10g0332 750 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 18 738 - -
Vvi10g0332 750 ProSiteProfiles Leucine-rich repeat profile. 313 335 IPR001611 GO:0005515
Vvi10g0332 750 Gene3D Phosphorylase Kinase; domain 1 616 721 - -
Vvi10g0332 750 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 44 208 - -
Vvi10g0332 750 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 389 579 - -
Vvi10g0332 750 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 616 721 - -
Vvi10g0332 750 Pfam Malectin domain 391 574 IPR021720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0332 Vvi-Chr10 3439036 3455432 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0332 16 736 Receptor kinase-like Gene Family AT1G29750 46.275 0.0 621
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi10g0332 Malectin 5.8e-38 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0332 - - vvi:104880495 1442.56