Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0330 ATGTCAGTTTCAACAAGCTATGATCTATCTTACAATAACTTTTCATGGCAAGGCCCTGAGCAACCTGCTTGTCAAGAGAACATGAATTTGAATGTTAACTTGTATCGGAGCTCTTCAATGGAGAACAACCTAAGGGCTGTTCTTCCATGCTCAAAGAATGACAATTGTCCACAATATGCATGTTCTTTCCACGTTAATTGTGGTGGAGATGATTTAACCATCAAAGAAAGTAAAAGAAAAGTTTTCTATGAAGGAGATGCAGAAGTTGAAGGTGGTACTGCAAAATATTTTAGAAGTAAAAACAGTTACTGGGGATTGAGCAGCACCGGGGACTTCATGGATGATAACAATGACCAAAACATGCGTTATATTGAAACTCTCTCATCAGGGAACATATCTGGAGTGTATACTACAGCTCGCCTTTCCCCTCTTTCACTCACTTATTTTGGCTATTGCTTAGAAAATGGGGATTATACTTTACAGCTGCATTTTGCTGAGATATATTTCACAAATGACAAAACATATGATAGTCTTGGGAAACGCTTGTTTGACATTTATATTCAGGAGCAATTGGTGCATAAGGATTTTAATATTGAAGATGAGGCTCGTGGAGCACGAAAGCCAGTTATGAAACAATTTAACACAAGTGTAACAAATAATGTCTTAGAGATCCGATTTTATTGGGCTGGCAAAGGAACAACACGAATCCCTAGCAGAGGAGTTTATGGCCCTCTCATATCAGCTATTTCTGTGCATCCAAATTTTAAATCTTGTTCAAGTAGTGGAAAAAAGGGAATGACTGCTTATATCATTGGTGGAGTGGTAGGATTATGCATTATTCTATTAATATTGGGTTTCCTTCAGTGGAAAGGTTGTTTGAGAGGCAGAAAGAGGGAAGAAAAAGATCCCGAAGGTCTAGATTTGCAAACAAGTTCCTTTACCTTGAAGCAAATAAAAAATGCCACCAACAACTTTGATTCTGCAAACAAGATTGGAGAAGGTGGTTTTGGTCCGGTTTTTAAGGGTCTGTTATCTGATGGTACCACAGTTGCAGTGAAACAGCTTTCATCTGGATCAAGGCAAGGAGATCAATTGTTGCTGGTATATGAGTACATGGAAAACAATAGCCTAGCCCGTGCTTTGTTTGGTCCAGAAAATAGTCAGCTGATACTGGATTGGCCAACTAGGCTTAAAATCTGTATTGGGATTGCTAAAGGATTGGCTTTTCTCCATGAAGAATCGAGACTCAAGATTGTACATAGAGATATTAAAGCTACTAATGTGCTTCTTGATAGAGACCTAAACCCTAAAATATCCGACTTTGGATTGGCTAGGCTCGATGATGGAGGGAAGAGCCACATTAGCACCAGGATTGCTGGAACGATAGGATATATGGCACCAGAGTATGCACTAAGGGGTTATCTGACGTACAAGGCTGATGTTTACAGTTTTGGTATTGTGGTTCTGGAAATTGTCAGTGGAAAAAACAACGATTATATGCCAAGTAACAGTTGCTTTTGTCTTTTAGATTGGGCCTGTCATTTGCAACAAAGTGGAAAGCTTCTGGAGCTTGTTGATGAGGCGTTGGGGTCTGAAGTCCGTGAAGAAGAAGCAGAAATGATGGTGAAAATGGCTATCTTGTGCACAAATGCATCCCCATCACTTAGGCCTACTATGTCTGAAGTGGTGAGCATGCTTGAAGGAAGGAAGCCTACTCCTGATATAATCCTGGAACCAAATTCCCACAATGAGGATGTGAGGTTTAAAGCCATAAGAGACTTTCGTCAGGAGAAGCGAAACCAGAGTTTGACTGGAATCCAAACCCAGAATTCAACAGCTCCTACAGAGCTTTACTATTCCTCTGCATCTGGCGTTGATTTCTGTGAAATCAACCCTGCTTCAAAATCCTATCAAGCAAATTCAAGGAGAGAGATGGCCACAGTTGTTCATATTCCCCTGCTCATCTTGCTTCTACATACATGCTTTGGCTCAACAAGTGTTGAAGCACTAGCTGGACATCTTCCTGATGAAGAAAAGGGAGTTCTGGAAGAAATAGCTGAACAATTGGGCAAGAAGGATTGGAAATTTGAACTAAACCCTTGTGATGGGAACTCCAACTGGAACACACTAGGCTCGAGATCAAATCCATTCTATAACAATACAATCACCTGCAATTGCTCCTTCCCTAATGGTGAATGCCATGTTGATAGCATATCTCTCAAAGGGCAGGATCTTGCTGGTGTGCTTCCACCTGCCCTAGCGAAACTATCCTACCTCAAAAAAATTGATTTGGCTAGGAACTATCTCAGTGGTAACATACCCCCTGAATGGGAAACTACAAAGTTAGAAACTCTGTCCATTTCTATGAACCGATTATCAGGACGAATCCCAAACTTCTTGGGGAATATTACCACCCTTAAAAATTTGGGTCTTGAGGGCAACCTGTTTTCTGGAACTGTTCCCCCTGAGCTTGGCAAACTGGTCGACTTGCAGAAGCTCATTCTTAATTCTAACAATCTCACTGGACCATTGCCTCAAGCGCTTGCTCACCTAACTAATTTGAAAGAGCTTAGGATTAGCAGCAACAATTTCACTGGAAAAATACCCAGTTTCATTCAAAGTTGGAAGCAACTTCAGCAATTAGAGATCCAAGCTAGTGGTTTGGAAGGGCCCATACCTTCTAATATTTCAGTCTTGAGTAATTTAACTGAACTGTGTCTGATAGGCAACCAGCTTAATGGAAATATTCCAGATGGAATCAAGGGAAGGCAGAGCCGCACAGAACTTGGTGGGTGCTTGAAAAACTATCCTTGTCAAAAAGGGGATCAATATGAAGGAGGTTCAGCAAAATTTCATCCTATGACTGATTATTGGGGATTTAGTAGCACTGGACACTTCTGGGATCATAACAGAACCATAAATGATTACATAGCACAAAATGTATCCGTACTTGGAATGAACCACTCTGAGTTGTACACCAGAGCACGACTTTCTCCTCTGTCTTTTACTTACTATGGGCGCTGCTTAGCGGATGGGAACTATACAGTAAAAATTCACTTTGCAGAGATAATTATCAGAGGCAATAAATCCTTTCATAGCCTTGGCAGACGGATTTTTAATGTTTATATTCAGGGAAAGTTGGAATTGGAGGATTTTAATATTGTACAAGCAGCACAAGGGGTTGATAAGGTAGTTGTAAAAGAATTTAAAGCAGTTGTGAAGAATAAAACTTTAGAGATCCGCTTTCATTGGGCTGGCAAGGGAACAACAGCTATACCAAGCAGAGGAACTTATGGTCCTCTCATATCAGCTATTTCTGTGGAATCTGATTTCAAGCCTCCTTCTAATGGCAAAAAGAAGATACTCATTGCAGTTCTAGTTTCAGTATTGGTTTTCATTTTCACAATTTTGGGCCTTATTTGCTGGAAATGCTACTTTGGACAGAGAACATCAAGAGAACAAGAGTTGAGAGGATTAGATCTGCAAACTGGTTTATTTACCTTGAGACAAATTAAAGCTGCTACAAACAGCTTTGATGCTGCAAATAAGATTGGGGAAGGAGGTTTTGGATCTGTCTACAAGGGTACATTATTAGATGGAACCATAATTGCAGTGAAGCAACTTTCCACCAAGTCAAAGCAAGGAAGTCGTGAATTTGTGAATGAAATTGGAATGATTTCTGCTTTACAACACCCAAATCTTGTAAGATTATATGGATGTTGTGTTGAAGGAAATCAACTGATATTGGTATATGAATACATGGAGAACAATAGTCTCGCTCGGGCTTTATTTGGTAAAGTGGAATACCGATTAAATTTGGACTGGTCCACGAGGCAGAGGATTTGTGTTGGCATAGCAAGAGGTTTGGCTTTCCTGCATGAAGGATCAACACTGAAAATTGTTCATAGAGACATAAAAGCAAATAATATACTACTTGATACGAATCTTAACCCTAAGATCTCTGATTTTGGTCTGGCGAAACTTGATGAAGAAGATAACACCCATATTAGCACCAGAGTTGCTGGAACCATAGGATACATGGCACCAGAGTATGCATTATGGGGTTATTTAACCTATAAAGCCGACGTATACAGTTTTGGGGTTGTTGCTTTGGAACTTGTTGCAGGGAAGAACAACATGAAATATAGACCAAATGAGGATTACTTTTGTCTTCTAGATTGGGCTTTTGTTTTACAACAGAAAGGAAATTTAATGGAGCTAGTGGATCCAAACTTGGGGACTGAGTTCAAAAAGGAAGAGGCCATAAGGATGATTAAAGTTGCCCTATTATGCACCAATGCATCTCCCGCACTTAGACCTACCATGTCTGCAGTGGTGAGCATGCTCAAAGGTCAAACTGTCGTTCAGGAATACCCTCTGAATCCTAGTATTTATGGTGATGAATTTGGGTTTGAAGCCCTCAGAGGCCAGCATGATCAGACACAATTACAGAGCTCAAGTGAAATTGAGCCCCTCAATCATTCATCACGTACAGCACGGAGTGGATCTTCCTTTACATCTTCCCAAGATCCATAA 4536 0.4034 MSVSTSYDLSYNNFSWQGPEQPACQENMNLNVNLYRSSSMENNLRAVLPCSKNDNCPQYACSFHVNCGGDDLTIKESKRKVFYEGDAEVEGGTAKYFRSKNSYWGLSSTGDFMDDNNDQNMRYIETLSSGNISGVYTTARLSPLSLTYFGYCLENGDYTLQLHFAEIYFTNDKTYDSLGKRLFDIYIQEQLVHKDFNIEDEARGARKPVMKQFNTSVTNNVLEIRFYWAGKGTTRIPSRGVYGPLISAISVHPNFKSCSSSGKKGMTAYIIGGVVGLCIILLILGFLQWKGCLRGRKREEKDPEGLDLQTSSFTLKQIKNATNNFDSANKIGEGGFGPVFKGLLSDGTTVAVKQLSSGSRQGDQLLLVYEYMENNSLARALFGPENSQLILDWPTRLKICIGIAKGLAFLHEESRLKIVHRDIKATNVLLDRDLNPKISDFGLARLDDGGKSHISTRIAGTIGYMAPEYALRGYLTYKADVYSFGIVVLEIVSGKNNDYMPSNSCFCLLDWACHLQQSGKLLELVDEALGSEVREEEAEMMVKMAILCTNASPSLRPTMSEVVSMLEGRKPTPDIILEPNSHNEDVRFKAIRDFRQEKRNQSLTGIQTQNSTAPTELYYSSASGVDFCEINPASKSYQANSRREMATVVHIPLLILLLHTCFGSTSVEALAGHLPDEEKGVLEEIAEQLGKKDWKFELNPCDGNSNWNTLGSRSNPFYNNTITCNCSFPNGECHVDSISLKGQDLAGVLPPALAKLSYLKKIDLARNYLSGNIPPEWETTKLETLSISMNRLSGRIPNFLGNITTLKNLGLEGNLFSGTVPPELGKLVDLQKLILNSNNLTGPLPQALAHLTNLKELRISSNNFTGKIPSFIQSWKQLQQLEIQASGLEGPIPSNISVLSNLTELCLIGNQLNGNIPDGIKGRQSRTELGGCLKNYPCQKGDQYEGGSAKFHPMTDYWGFSSTGHFWDHNRTINDYIAQNVSVLGMNHSELYTRARLSPLSFTYYGRCLADGNYTVKIHFAEIIIRGNKSFHSLGRRIFNVYIQGKLELEDFNIVQAAQGVDKVVVKEFKAVVKNKTLEIRFHWAGKGTTAIPSRGTYGPLISAISVESDFKPPSNGKKKILIAVLVSVLVFIFTILGLICWKCYFGQRTSREQELRGLDLQTGLFTLRQIKAATNSFDAANKIGEGGFGSVYKGTLLDGTIIAVKQLSTKSKQGSREFVNEIGMISALQHPNLVRLYGCCVEGNQLILVYEYMENNSLARALFGKVEYRLNLDWSTRQRICVGIARGLAFLHEGSTLKIVHRDIKANNILLDTNLNPKISDFGLAKLDEEDNTHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALELVAGKNNMKYRPNEDYFCLLDWAFVLQQKGNLMELVDPNLGTEFKKEEAIRMIKVALLCTNASPALRPTMSAVVSMLKGQTVVQEYPLNPSIYGDEFGFEALRGQHDQTQLQSSSEIEPLNHSSRTARSGSSFTSSQDP* 1512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0330 1511 Gene3D Phosphorylase Kinase; domain 1 296 374 - -
Vvi10g0330 1511 ProSiteProfiles Protein kinase domain profile. 325 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0330 1511 Pfam Malectin domain 63 249 IPR021720 -
Vvi10g0330 1511 Pfam Malectin domain 976 1105 IPR021720 -
Vvi10g0330 1511 Pfam Protein tyrosine and serine/threonine kinase 361 566 IPR001245 GO:0004672|GO:0006468
Vvi10g0330 1511 SMART serkin_6 1178 1449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0330 1511 SMART serkin_6 325 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0330 1511 ProSiteProfiles Protein kinase domain profile. 1178 1455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0330 1511 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 60 254 - -
Vvi10g0330 1511 FunFam Uncharacterized protein 844 922 - -
Vvi10g0330 1511 Gene3D - 60 254 - -
Vvi10g0330 1511 Gene3D - 939 1110 - -
Vvi10g0330 1511 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 931 1110 - -
Vvi10g0330 1511 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Vvi10g0330 1511 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1300 1312 IPR008271 GO:0004672|GO:0006468
Vvi10g0330 1511 Gene3D Transferase(Phosphotransferase) domain 1 1254 1460 - -
Vvi10g0330 1511 SUPERFAMILY L domain-like 715 920 - -
Vvi10g0330 1511 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 294 381 - -
Vvi10g0330 1511 Pfam Protein kinase domain 1181 1446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0330 1511 Gene3D Ribonuclease Inhibitor 845 930 IPR032675 -
Vvi10g0330 1511 SUPERFAMILY Protein kinase-like (PK-like) 1162 1468 IPR011009 -
Vvi10g0330 1511 MobiDBLite consensus disorder prediction 1480 1511 - -
Vvi10g0330 1511 CDD STKc_IRAK 1184 1451 - -
Vvi10g0330 1511 FunFam Putative LRR receptor-like serine/threonine-protein kinase 372 578 - -
Vvi10g0330 1511 Gene3D Phosphorylase Kinase; domain 1 1144 1253 - -
Vvi10g0330 1511 Gene3D Ribonuclease Inhibitor 691 844 IPR032675 -
Vvi10g0330 1511 FunFam Putative LRR receptor-like serine/threonine-protein kinase 1254 1461 - -
Vvi10g0330 1511 ProSitePatterns Protein kinases ATP-binding region signature. 1184 1206 IPR017441 GO:0005524
Vvi10g0330 1511 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 680 843 - -
Vvi10g0330 1511 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 933 1487 - -
Vvi10g0330 1511 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 1147 1253 - -
Vvi10g0330 1511 SUPERFAMILY Protein kinase-like (PK-like) 309 586 IPR011009 -
Vvi10g0330 1511 Gene3D Transferase(Phosphotransferase) domain 1 375 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0330 Vvi-Chr10 3402601 3422153 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0330 8 601 Receptor kinase-like Gene Family AT1G53430 51.869 0.0 574
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi10g0330 Pkinase 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0330 - - vvi:100244640 2910.94