Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0328 ATGGGAGCAACATATTGGAAGTTTGATGGAGATTCTTGCCAAATTGAAACAGTTGGGTTAACACCACAGCCACCGAGGGGATCCGAGCAAAACATTATTTGTAACAATTTCCTTGAGAAGAACAACACTGCCCTTCATGTTGTAAGCATTATGCTAAAGGGGTATAATCTTCCTGGTGTGCTTCCACCTGAGCTAGTCGAGCTGCAATACCTTCAAGAGATCGATTTTGCTTATAATTATCTTGGTGGTACAATACCACCTGAATGGGCTTCAGCACAATTGAGTTCAATCTCTGTACTTGCCAACCGATTATCAGGTGAAATTCCGAAGGAATTGGGAAACATTACCAGTCTCACATACCTGAACCTTGAAGCAAACCAATTTTCTGGCATTGTCCCTCCTGTGCTTGGGGACTTAATCAATTTGAAAACTTTGATCCTGTCTTCCAATCAGTTTTTTGGAAATTTGCCAACAACACTAGCTGGGCTAAGAAGCTTAACAGACTTTAGGATAAATGATAACAACCTTAGTGGACCTATACCCGAATTTATACAAAACTGGAAACAACTGACAAGAATAGAAATGCATGCAAGTGGACTGGAGGGACCCATTCCATCAAACATTTCCCTTTTGGATAAGTTAATTCAGTTGAGGATTAGTGATATAAATGGGACAACTCAAGCTTTTCCTATGCTGATCAAAATGACGGGCATAGTAAGATTGATTTTGAGGAACTGCAAGATTTCTGGAGAAATCCCCGCATACATCTGGAAAATGAAGTATCTGGAAATGTTGGATGTCAGTTTCAACAATTTGGTAGGTGAGATTCCAAATGACATAAGTTCAGCAAAGGCATTGAACTTCATCTATTTAAGCAGCAACTTGCTAAGTGGAAATGTGCCAGACTTATTCTTGAAGAAAGGAAGTAGTATTGATCTTTCCTACAATAACCTTTCATGGCAAGGCCCTGGGCAACCTACTTGTCAAGAGAACATGAATCTAAACCTTAACTTGTATCGGAGCTCTTCAATGGAGAACAACCTAAGGGCAGTTCTTCCATGCTCAAGGAATGTCAATTGTCCACGATATGTATGTTCCTTCTATATTAATTGTGGTGGAAATGATTTAACCATCAAAGAAAGGAGAGGAAAGGTTGTATATCAAGGAGATGCAAAAATTGAAGGTGGTGCTGCAAACTATTATACTAGTAACAGTTACTGGGGATTGAGTAGCTCTGGGGACTTCATGGATGATAACAATTTCCAAAACACACGTTATATTGAAACTCTGTCATCAGGGAACATCTCTGGAGTGTATACTACAGCTCGCCTTTCTCCTCTTTCACTTACTTATTTTGGTTATTGCTTAGAAAATGGGATTTACACCCTACAGCTGCACTTCACTGAGATATATTTCACAGATGACAAGACATATAATAGCCTTGGGAAACGCCTGTTTGACATTTATATTCAGGAAAAATTGGTTCATAAGAATTTCAACATTGAAGATGAGGCCCATGGAGCTCGAAATCCAGTTATGAAACAATTTAATGCCAGTGTGATAAATAATATCTTAGAGATTCGATTTTATTGGGCTGGCAAAGGGACAACAAGAATTCCTTACAGAGGAGTTTATGGCCCTCTCATATCAGCTATTTCTGTGTATCCCAATTTCAAATCTTGTTCAAGTAGTAGGAAAGAGGAAACAAATGCATATATTATTGGAGGAGTGGTAGGATTATTCATTATTTTCTTAATATTGGGTCTTCTTGCGTGGAAAGGTTGTTTGAGAGGCAAAAAAAAGGAAGAAAAAGCCTATATTTCTATGTTTCCTTCCTGGATAGATCTCGAAGGACTAGATATGCAAACAGGTTCTTTTACCTTAAAACAAATAAAAGCTGCCACCAAAAATTTTGATTTTGCAAACAAGATTGGAGAAGGAGGTTTTGGTCCAGTTTATAAGGGTCTGTTATCCGATGGTACCATAGTTGCAGTGAAACAGCTTTCCTCTATATCAAGGCAAGGAAATCGTGAATTTTTGAATGAGATAGCCATGATTTCTTGTTTGCAACACCCAAATCTGGTGAAACTTCATGGATGTTGTGTTGAAGGAGATCAACTGTTACTGGTATATGAGTACATGGAAAACAATAGCCTAGCTGGCGCTCTGTTTGGTCCAGAAAATGGTCTGCCGAACCTGGACTGGCCAACTAGGCTTAAAATCTGTATTGGTATTGCCAAGGGATTAGCTTTTCTCCACGAAGAATCAAGGATTAAGATTGTCCACAGAGATATTAAAGCTACTAATGTGCTTCTTGATAGAGACCTAAACCCTAAAATATCTGACTTTGGACTGGCTAGGCTTGATGAAGGGGAGAAGAGCCATATTAGCACCAGGGTTGCTGGAACCATAGGATATATGGCACCAGAGTATGCACTGTGGGGTTATCTGACATACAAGGCAGATGTTTACAGTTTTGGGATTGTGGCTTTGGAAATTGCCTGTCTGTTGCAGCAAAGCAGAAAGTTTCTGGAGCTGGTTGATGAGAAGTTGGGGTCTAAAGTCAATGAAGAAGAGGCAGAAAGGATGATTAAAGTGGCTCTCTTGTGCACAAATGCATCCCAATCACTTAGGCCTACCATGTCTGAAGTGGTAAGCATGCTTGAAGCCCGAATGCCTATTCCTGATATGATCCCAGGACCAAGTACCTACACCGAAGATTTGAGGTTCAAGGCAATGAGAGACTTTCGTCAAGACAAGAGAAACCAGAGTCTGAGTGAAGGTCGTCAATCCCTAAATTTAACAGGTCATACAGAGCTAGAGCTTTGCTCTACCTCTACATCTGGCCCTGAGTTCTATGAAATCAACCCACATTCGGAATCCTGTTAA 2889 0.3994 MGATYWKFDGDSCQIETVGLTPQPPRGSEQNIICNNFLEKNNTALHVVSIMLKGYNLPGVLPPELVELQYLQEIDFAYNYLGGTIPPEWASAQLSSISVLANRLSGEIPKELGNITSLTYLNLEANQFSGIVPPVLGDLINLKTLILSSNQFFGNLPTTLAGLRSLTDFRINDNNLSGPIPEFIQNWKQLTRIEMHASGLEGPIPSNISLLDKLIQLRISDINGTTQAFPMLIKMTGIVRLILRNCKISGEIPAYIWKMKYLEMLDVSFNNLVGEIPNDISSAKALNFIYLSSNLLSGNVPDLFLKKGSSIDLSYNNLSWQGPGQPTCQENMNLNLNLYRSSSMENNLRAVLPCSRNVNCPRYVCSFYINCGGNDLTIKERRGKVVYQGDAKIEGGAANYYTSNSYWGLSSSGDFMDDNNFQNTRYIETLSSGNISGVYTTARLSPLSLTYFGYCLENGIYTLQLHFTEIYFTDDKTYNSLGKRLFDIYIQEKLVHKNFNIEDEAHGARNPVMKQFNASVINNILEIRFYWAGKGTTRIPYRGVYGPLISAISVYPNFKSCSSSRKEETNAYIIGGVVGLFIIFLILGLLAWKGCLRGKKKEEKAYISMFPSWIDLEGLDMQTGSFTLKQIKAATKNFDFANKIGEGGFGPVYKGLLSDGTIVAVKQLSSISRQGNREFLNEIAMISCLQHPNLVKLHGCCVEGDQLLLVYEYMENNSLAGALFGPENGLPNLDWPTRLKICIGIAKGLAFLHEESRIKIVHRDIKATNVLLDRDLNPKISDFGLARLDEGEKSHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGIVALEIACLLQQSRKFLELVDEKLGSKVNEEEAERMIKVALLCTNASQSLRPTMSEVVSMLEARMPIPDMIPGPSTYTEDLRFKAMRDFRQDKRNQSLSEGRQSLNLTGHTELELCSTSTSGPEFYEINPHSESC* 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0328 962 Pfam Malectin domain 367 552 IPR021720 -
Vvi10g0328 962 ProSiteProfiles Protein kinase domain profile. 638 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0328 962 SUPERFAMILY L domain-like 85 337 - -
Vvi10g0328 962 ProSitePatterns Serine/Threonine protein kinases active-site signature. 760 772 IPR008271 GO:0004672|GO:0006468
Vvi10g0328 962 Gene3D Ribonuclease Inhibitor 30 356 IPR032675 -
Vvi10g0328 962 Gene3D Transferase(Phosphotransferase) domain 1 714 894 - -
Vvi10g0328 962 Gene3D Phosphorylase Kinase; domain 1 608 713 - -
Vvi10g0328 962 SMART serkin_6 638 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0328 962 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 364 557 - -
Vvi10g0328 962 SUPERFAMILY Protein kinase-like (PK-like) 623 897 IPR011009 -
Vvi10g0328 962 FunFam Lectin-domain containing receptor kinase A4.3 714 842 - -
Vvi10g0328 962 Pfam Protein tyrosine and serine/threonine kinase 640 888 IPR001245 GO:0004672|GO:0006468
Vvi10g0328 962 Gene3D - 365 558 - -
Vvi10g0328 962 FunFam Leucine-rich repeat transmembrane protein kinase 6 356 - -
Vvi10g0328 962 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 5 924 - -
Vvi10g0328 962 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 611 713 - -
Vvi10g0328 962 CDD STKc_IRAK 644 889 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0328 Vvi-Chr10 3358655 3390494 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0328 1 804 Receptor kinase-like Gene Family AT1G29750 58.488 0.0 943
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi10g0328 PK_Tyr_Ser-Thr 7.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0328 - - vvi:100266961 1898.25