Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0326 ATGTCACATACCGTTTCTTACTGTTTCTCTTGTTATCAATTGAATTACTTCATAAGGAATTTAAGTGTCACATTCTATCATTCTAATGGACTATTTTGGGACATAAGTAAGGAGGAAGAATCAAGAAAGATGGTGAAAGTTAATGAAGACAAAAGAAGCATCACCTATGAAGGAGATACAGCAAGGGACAACAGTGATGCAAAATACTATTTAAGTGCTGATAACAACAACTGGGGATTTAGTAGCTCTGGAGACTTCATGGATGACAATAATGAACTAAATAAAGATTATATTATAACTTCAAAATCACAAATCTCTGAGACATTATACAACACAGCACGAATTTCTCCTCTCTCTCTCACTTATTTCAGATATTGTCTACAAAATGGGAGTTATAGTGTGCGTCTCCACTTTGCCGAGATAGAATTCACAAATGATAGTACATACGGAAGCCTTGGGAAACGCATGTTTGATATTTATGCCCAGGATGAATTGGTAAAGAAGGATTTCAATATTGAAGATCATGCCAAAGGGGCTCTTAAGCCATATACTTTACCATTTAATGCAACTGTGACAAATAATGTGCTAGAGATCCGCTTCTATTTTGCTGGCAGAGGAACAACTAGAATTCCTCAAAGAGGAGTCTATGGCCCCCTCATATCAGCTATCTCTGTGGATCCCAATTTCACACCCCCATCTGAAGGTGGAAAGACAAAGACTGCACCTATCATTATTGGAGTTGTAGCGGCATGTCTTATTTGCTTGGCACTGGGAATTTTTTGGTGGAGAGTCAACTTGAGAACCAAAAATGGGAGAGAAAAAGATTTTGGAGGATTAGATGTCCACATAGGATCCTTTACCTTAAAACAAATAAAAGCTGCCACCAACAATTTTGATTCTCTAAACCAGATTGGGGAAGGTGGATTTGGTCCTGTGTACAAGGGGCTATTACCTGATGGTACTGCGATTGCCGTGAAGCAGCTTTCATCTAAATCAACTCAGGGGAATCGTGAATTTTTGAATGAGATAGGCATGATTTCTTGTTTGCAGCACCCAAATCTTGTGAAACTTCATGGATGTTGTATCGAAGGGAACCAACTCTTGCTCGTATATGAATACATGGAAAATAATAGCCTTGCCCGTGCCTTGTTAGGCCCAGAAAACTGTCAACTGAAACTGGATTGGCCAACAAGGCAGAAGATTTGTGTTGGGATAGCCAGAGGTTTAGCTTTTCTCCATGAAGAATCAAGACTCAAGATTGTTCACAGAGATATCAAAGGTACAAATGTACTGCTTGATGGGGACCTAAATCCCAAAATTTCCGACTTTGGGCTGGCTAAACTTCATGAAGAGGAGAAAACCCACATCAGCACCCGAGTTGCTGGAACAATAGGGTACATGGCTCCAGAATATGCACTTTGGGGTTACCTAACCTATAAAGCAGATGTTTACAGTTTCGGAGTTGTGGCTTTGGAAATTGTTAGTGGGAAGCACAATATGAGTTATCAGCCCAAGAATGATTGTGCTTGTCTTCTAGACTGGGCCTGTTCTTTGCAGCAAAGTGGAGACATAATGGAGCTAGTGGATCAAAAGCTGGGATCTGAATTCAACAAGAAAGAGGCAGAAAGGATGATCAAAGTAGCTCTCTTATGCACTAATGCTTCCCCATCACTAAGGCCAAACATGTCTGAAGCGGTTAGCATGCTGGAAGGAATAACTACCATCCCAGATGCAATACCAGAAGCAGGTAGCTACAGTGAAGATTTGAGGTTTAAGGCTATAAGAGAATATCACAAGCATACAAGATCTAAGGTTTTGGAAATAAGTGAGGTCCAAGCTGACTCAACATCAGGCAGACAGGCTTGGATTCAATCTACCTCTGCGTCTGCCCATGATCTCTATGATATTAACATGGAGTCGTATTTGAGGTCTAGATCCACAAGGCAACATAATACAGAGATAGAAAGCCATCTTTCAGAAGGAACCCAGACTGAGATAACATCAAAACATCCATGGATTAGCTCTTCCTCTACATCTGGCCAGGATCTTTACAGTTTTAACCTGGAATCCCACTAG 2076 0.4056 MSHTVSYCFSCYQLNYFIRNLSVTFYHSNGLFWDISKEEESRKMVKVNEDKRSITYEGDTARDNSDAKYYLSADNNNWGFSSSGDFMDDNNELNKDYIITSKSQISETLYNTARISPLSLTYFRYCLQNGSYSVRLHFAEIEFTNDSTYGSLGKRMFDIYAQDELVKKDFNIEDHAKGALKPYTLPFNATVTNNVLEIRFYFAGRGTTRIPQRGVYGPLISAISVDPNFTPPSEGGKTKTAPIIIGVVAACLICLALGIFWWRVNLRTKNGREKDFGGLDVHIGSFTLKQIKAATNNFDSLNQIGEGGFGPVYKGLLPDGTAIAVKQLSSKSTQGNREFLNEIGMISCLQHPNLVKLHGCCIEGNQLLLVYEYMENNSLARALLGPENCQLKLDWPTRQKICVGIARGLAFLHEESRLKIVHRDIKGTNVLLDGDLNPKISDFGLAKLHEEEKTHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEIVSGKHNMSYQPKNDCACLLDWACSLQQSGDIMELVDQKLGSEFNKKEAERMIKVALLCTNASPSLRPNMSEAVSMLEGITTIPDAIPEAGSYSEDLRFKAIREYHKHTRSKVLEISEVQADSTSGRQAWIQSTSASAHDLYDINMESYLRSRSTRQHNTEIESHLSEGTQTEITSKHPWISSSSTSGQDLYSFNLESH* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0326 691 Gene3D - 46 227 - -
Vvi10g0326 691 FunFam Putative LRR receptor-like serine/threonine-protein kinase 374 581 - -
Vvi10g0326 691 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 42 228 - -
Vvi10g0326 691 Gene3D Transferase(Phosphotransferase) domain 1 374 579 - -
Vvi10g0326 691 SUPERFAMILY Protein kinase-like (PK-like) 281 581 IPR011009 -
Vvi10g0326 691 Pfam Malectin domain 49 223 IPR021720 -
Vvi10g0326 691 MobiDBLite consensus disorder prediction 647 680 - -
Vvi10g0326 691 SMART serkin_6 298 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0326 691 Pfam Protein kinase domain 300 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0326 691 Gene3D Phosphorylase Kinase; domain 1 263 373 - -
Vvi10g0326 691 MobiDBLite consensus disorder prediction 656 680 - -
Vvi10g0326 691 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 267 373 - -
Vvi10g0326 691 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 33 602 - -
Vvi10g0326 691 CDD STKc_IRAK 304 572 - -
Vvi10g0326 691 ProSiteProfiles Protein kinase domain profile. 298 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0326 691 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0326 Vvi-Chr10 3313424 3322659 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0326 45 635 Receptor kinase-like Gene Family AT1G07650 55.316 0.0 634
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi10g0326 Pkinase 2.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0326 - - vvi:100246406 1308.89