Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0323 ATGGGCGAGATATCAGGAGCCAATGGAAACCATGAGGTTTCCCTGAACATAAAAGACAGTGATGCCAATCATAATCCTCCACCCCCCTCCACCGCAACAAAACAAGGATCCACCTCCTCTTTCTCTTTTCCTTTCGTACAAAAGTTAATCGCAGAGGTGTTGGGCACGTACTTCTTGATATTCGCTGGCTGTGCTGCGGTGGTGGTGAATTCTGACAAGGATAGCGTAGTGACTTTGCCCGGAATATCCATAGTGTGGGGACTGGTTGTGATGGTAATGGTCTACTCCGTCGGCCACATCTCCGGTGCCCACTTCAACCCAGCTGTCACCATTGCTTTCGCTACTTGCAAGAGATTCCCATGGAAACAGGTTCCGGCCTATGTAGTGGCTCAAGTGATTGGATCAACGCTAGCAAGTGGAACCCTTCGACTGATTTTCAACGGGAAGCAAGACCACTTTCCTGGAACTCTTCCGGCAGGCTCGGACTTGCAGTCCTTTGTCATCGAGTTCATAATCACATTCTACCTCATGTTTGTCATCTCCGGCGTTGCCACCGACAATAGAGCTATTGGGGAACTTGCTGGGCTTGCCGTCGGAGCTACTGTGTTACTTAATGTGATGTTTGCAGGGCCAATTTCGGGTGCTTCGATGAATCCAGCAAGGAGTTTGGGGCCTGCAATTGTATCGAACACTTACAGGGGGATATGGATATATTTACTGGCACCGACTTGTGGCGCCATATCAGGAGCTTGGGTCTACAACATCATCAGGTTCACCGACAAGCCCCTTCGTGAGATCACCAAGAGTGGCTCCTTCCTGAAAAGCAAATCGTCCCGTAATGGGTCTTAA 849 0.4971 MGEISGANGNHEVSLNIKDSDANHNPPPPSTATKQGSTSSFSFPFVQKLIAEVLGTYFLIFAGCAAVVVNSDKDSVVTLPGISIVWGLVVMVMVYSVGHISGAHFNPAVTIAFATCKRFPWKQVPAYVVAQVIGSTLASGTLRLIFNGKQDHFPGTLPAGSDLQSFVIEFIITFYLMFVISGVATDNRAIGELAGLAVGATVLLNVMFAGPISGASMNPARSLGPAIVSNTYRGIWIYLLAPTCGAISGAWVYNIIRFTDKPLREITKSGSFLKSKSSRNGS* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0323 282 PRINTS Major intrinsic protein family signature 168 186 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi10g0323 282 PRINTS Major intrinsic protein family signature 86 110 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi10g0323 282 PRINTS Major intrinsic protein family signature 236 256 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi10g0323 282 PRINTS Major intrinsic protein family signature 123 142 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi10g0323 282 PRINTS Major intrinsic protein family signature 199 221 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi10g0323 282 PRINTS Major intrinsic protein family signature 47 66 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi10g0323 282 MobiDBLite consensus disorder prediction 16 38 - -
Vvi10g0323 282 ProSitePatterns MIP family signature. 104 112 IPR022357 -
Vvi10g0323 282 FunFam Aquaporin NIP1-1 8 266 - -
Vvi10g0323 282 PANTHER AQUAPORIN NIP2-1 33 274 IPR034294 -
Vvi10g0323 282 CDD MIP 47 256 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi10g0323 282 Pfam Major intrinsic protein 42 253 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi10g0323 282 NCBIfam MIP family channel protein 51 253 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi10g0323 282 SUPERFAMILY Aquaporin-like 41 266 IPR023271 -
Vvi10g0323 282 Gene3D Glycerol uptake facilitator protein. 5 267 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0323 Vvi-Chr10 3271408 3273129 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0323 47 282 Major Intrinsic Protein MIP AT5G37810 64.135 1.37e-107 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0323 K09874 - vvi:100263543 550.436