Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0317 ATGGATGAATCTCCAGGCAGTTCAAATTCACCACCTCCATTTCTTACTAAAACATATGAAATGGTGGATGATCCTACTACAGACTCAATTGTCTCTTGGAGTCAGACTAATAAAAGCTTCATCGTGTGGAATCCAGAAGATTTTTCAAGGGATTTGCTGCCGAGGTTCTTCAAGCACAATAACTTCTCCAGCTTTATCAGGCAGCTCAATACATATGGCTTTAGAAAAATTGATTCAGAGCAGTGGGCATTTGCAAATGAGGATTTTATCAGAGGTCAGCCACACCTTCTGAGGAACATCCATAGACGCAAGCCAGTTCATAGCCATTCCATACAGAATCAAAAAGGACAAGGGACTTCTTGTCCATTATCTGAATCTGACAGAGAGGGTTATCGGGCTGACATTGAAAGGCTGAAACATGATAAGGGGGCACTTCTTTTGGAGTTACAGAGGCATAAAGAAGACAGGCAAGGACTTGAGTTGCAAATGCAGCATCTAAAGGATCGCTTACAACATATGGAACAACGTCAGCAAACTGTGATATCTTACTTGGCTCGAATGTTGCAGAAACCAGGGCTTGCCTTATCTTTCCTACCGTCAATGGAAACCCATAACAGAAAGAGAAGGTTGCTGACAAGTAATTGTTTCTATGATGAGTCTGATGTTGAAGAGAATCGCATAGCAACTTCCCATACAGTGAACACAGAAAAGCTTGATGCTACTTCTGTTTTGGAGCTGGTGGAGTTTTTGGAGTCATCCCTAAGTTCTTGGGAGGATATTCTTGATGAATTTCGTCCAACTTCTGGTGAAGAGGTAATATATGGTGTTGGGGTGCCTGCACAGCCTTTTGCAGTTGTTCTTACTGAAATTGATGCATCATCAGGGGATGCAGACATAAATTTGCAACAGCAATCACCTAGGTTAAATCTATCTTCTAATTGTTCAAGGGACGTTAATTCATCCGTGGAGTTGGATGAATCTATGAGTTGTGCAGAAAGTCCAGGTATATCTTACATTCAACTTAATATTGATACTAGGTCTAAATCTACTGGGATTGACATGAATTGCAAGCCCGCTGCTACTGCTCCTGAGGTTACTACCTTAAAAGAACAAGTAGTTGGAGCTGCATCTCCTGTTCCAACTGGGGTCAACGACGTATTCTGGGAACAGTTCTTCACTGAGAATCCTGATTCATCAGCAGAGGAAGTTCAGTTAGAAAGAAAGGATGATGAAAGCAGGAAGAATGAAGGGAAGCATGGTGATCATGGCAGGTTTTGGTGGAATGCAAGGAGTGCAAATAAGCTTGCAGATCAAATGGGACAGCTTACTCCAGCAGAGAGAACTTGA 1347 0.4209 MDESPGSSNSPPPFLTKTYEMVDDPTTDSIVSWSQTNKSFIVWNPEDFSRDLLPRFFKHNNFSSFIRQLNTYGFRKIDSEQWAFANEDFIRGQPHLLRNIHRRKPVHSHSIQNQKGQGTSCPLSESDREGYRADIERLKHDKGALLLELQRHKEDRQGLELQMQHLKDRLQHMEQRQQTVISYLARMLQKPGLALSFLPSMETHNRKRRLLTSNCFYDESDVEENRIATSHTVNTEKLDATSVLELVEFLESSLSSWEDILDEFRPTSGEEVIYGVGVPAQPFAVVLTEIDASSGDADINLQQQSPRLNLSSNCSRDVNSSVELDESMSCAESPGISYIQLNIDTRSKSTGIDMNCKPAATAPEVTTLKEQVVGAASPVPTGVNDVFWEQFFTENPDSSAEEVQLERKDDESRKNEGKHGDHGRFWWNARSANKLADQMGQLTPAERT* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0317 448 SUPERFAMILY "Winged helix" DNA-binding domain 9 103 IPR036390 -
Vvi10g0317 448 MobiDBLite consensus disorder prediction 105 126 - -
Vvi10g0317 448 Coils Coil 135 176 - -
Vvi10g0317 448 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi10g0317 448 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi10g0317 448 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi10g0317 448 MobiDBLite consensus disorder prediction 110 124 - -
Vvi10g0317 448 MobiDBLite consensus disorder prediction 395 427 - -
Vvi10g0317 448 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi10g0317 448 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi10g0317 448 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 240 IPR027725 -
Vvi10g0317 448 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi10g0317 448 Gene3D - 6 104 IPR036388 -
Vvi10g0317 448 MobiDBLite consensus disorder prediction 400 425 - -
Vvi10g0317 448 FunFam Heat shock transcription factor 1 7 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0317 Vvi-Chr10 3230828 3232568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0317 7 448 HSF AT4G18880 46.325 7.95e-113 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vvi10g0317 HSF_DNA-bind 9.5e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0317 K09419 - vvi:100258413 895.575