Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0313 ATGGCCTCCGCTGCGATAGTATCGTCTCTGCGGCGGCGGAGATCGCCGTCTTTGGAGGCTTTCTTGGCGCCGGTGGATCTAAACGAGGTGGCTCTTGTACGGACACTGGCCACCATCTCCATGGAGCTTATATTTGCGTTTTCCGATAGGCCTTGGCCGTTTCAGCGCAAGAATTCGAGGTCCTTGATTCGGAAAATTGAGGTCTTTCTGGTGCTGTTAGAGTTCCTGAGGGATTGCAATTTGAGTCTGCCTTCGGCGGCGGTGCTTTGCTTCAAGGAGCTTTACCTGCTTCTGTATCGGTCGAAGATACTTCTCGATTATTGCTTGCAATCAAGTAAATTGTGGCTTCTGTTGCAGAACCAGTCGATTTCGGGGCATTTTCATGATCTTAATCAGGAAATTTCGACGCTGTTGGATGTATTTCCGATGGAGGAACTTGAATTGACTGAAGATATAAGGGAGCAGCTTGAGCTTTTGCAGAAACAGGTGAGGAGGGCGAAGTTGTTTCTTGATAAGAATGATGAGGGGTTGAGGCTGAGGTTGTATTCTTTTCTTGATGACTTTGGGAGTGGGCGGATTCCTGATCCAGTGGAGCTGCGGTTGTTTTTTGTGGATAGATTAGGGATTCGGGATGCGAAGAGTTGTAGGGCTGAAATTGAGTTTTTGGAGGAGCAGATTTATAGTCACGAGGGAGATGTTGAGCCGAATGTTGCTGTGCTTAATGGGTTCGTTGCGCTTACTCGATATTGCAGATTCTTGCTATTTGGATTTGAGGAGAGCGAGGTAGAAATGAGTTTTGGGATTAAGAAGCCGAGGAAAGGGTTGATTACTCAAGAAATTGGGGATACCTTCATAACAGTCCCCAAGGACTTTTGTTGCCCCATATCTTTGGATGTGATGCGAGACCCAGTAATAATTTCAACAGGACAGACATATGATCGAACTTCAATATCAAGGTGGATGGAAGAAGGGCATTGTAGTTGCCCAAAGACAGGGCAGATGCTTGCTCACCCTCGCCTTGTTCCCAATCGAGCTCTCAGGAATTTGATCACACAATGGTGCACTGCTTATGGAATCACCTTGGATCCACCAGACAGCCCAGATAGTGTTGTAGAAACTTTTGCAGCAGCTTTGCCAACCAAAGCTGCTATTGAAGCCAACAAAGCCACAGCAGCGCTTCTCGTCCAACAGCTTGCAAGTGGTTCACAGGGTGCAAAGACTGTAGCTGCCCGTGAGATACGTTTATTAGCAAAAACAGGGAAGGAAAACCGTGCGTATATAGCAGAAGCTGGGGCAATCCCCCATCTTCTCAAGCTACTCTCATCTCCAAATTCTGTCGCACAAGAGAATTCTGTAACGGCAATGCTTAACCTATCAATATATGACAAGAACAAAAGCCGAATTATGGATGAGGATGGGTGTTTAGGTTTGATTGTTGAAGTTCTGATATTTGGGCACACAACGGAAGCAAGGGAAAATGCAGCTGCGACATTGTTCAGCCTTTCTGCTGTTCATGATTATAAGAAGAGAATAGCGGACGAGGGTGGGGCAGTTGAAGCCCTGGCAGGGCTGTTGAGAGAGGGAACCCCAAGAGGAAGGAAAGATGCTGTAACGGCTCTATTTAATCTATCAACCCACACAGATAATTGTGCCAGAATGGTAGCGTCAGGGGCTGTAACTGCATTAGTAGCGGCCTTGGGAACTGAGGGGGTTGCAGAGGAAGCAGCGGGAGCATTGGCCTTGATTGTTAGGCGGCCAATTGGGGCTGAAGCAGTAGGGAGGGAGGAAATGGCAGTGGCTGGGTTATTAGGAATGATGCGGTGTGGGACTCCAAGGGGGAAAGAGAATGCAGTTGCAGCATTGCTTGAACTGTGCAGAAGTGGCGGGACAGCTGCAACAGAAAGGGTCCTTAAGGCTCCAGCGCTGGCTGGTTTGCTTCAGACTCTGTTGTTTACAGGTACAAAGCGCGCTAGGAGAAAGGCTGCATCCCTTGCCAGAGTTTTCCAGAGGTGTGAGAATGCAGCCTTGCATTTTGGTGGACTTGGTGTAGGGTATGCATTTGCCAGAAACTCATCTGCAAATACCGATGCAAGCTTTTCTAGTGAGGTTTCCATGCAAATGCCCATTTCAGTGCCTGTTTTGTAG 2145 0.4793 MASAAIVSSLRRRRSPSLEAFLAPVDLNEVALVRTLATISMELIFAFSDRPWPFQRKNSRSLIRKIEVFLVLLEFLRDCNLSLPSAAVLCFKELYLLLYRSKILLDYCLQSSKLWLLLQNQSISGHFHDLNQEISTLLDVFPMEELELTEDIREQLELLQKQVRRAKLFLDKNDEGLRLRLYSFLDDFGSGRIPDPVELRLFFVDRLGIRDAKSCRAEIEFLEEQIYSHEGDVEPNVAVLNGFVALTRYCRFLLFGFEESEVEMSFGIKKPRKGLITQEIGDTFITVPKDFCCPISLDVMRDPVIISTGQTYDRTSISRWMEEGHCSCPKTGQMLAHPRLVPNRALRNLITQWCTAYGITLDPPDSPDSVVETFAAALPTKAAIEANKATAALLVQQLASGSQGAKTVAAREIRLLAKTGKENRAYIAEAGAIPHLLKLLSSPNSVAQENSVTAMLNLSIYDKNKSRIMDEDGCLGLIVEVLIFGHTTEARENAAATLFSLSAVHDYKKRIADEGGAVEALAGLLREGTPRGRKDAVTALFNLSTHTDNCARMVASGAVTALVAALGTEGVAEEAAGALALIVRRPIGAEAVGREEMAVAGLLGMMRCGTPRGKENAVAALLELCRSGGTAATERVLKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENAALHFGGLGVGYAFARNSSANTDASFSSEVSMQMPISVPVL* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0313 714 SMART arm_5 546 584 IPR000225 GO:0005515
Vvi10g0313 714 SMART arm_5 503 545 IPR000225 GO:0005515
Vvi10g0313 714 SMART arm_5 420 460 IPR000225 GO:0005515
Vvi10g0313 714 PANTHER U BOX DOMAIN-CONTAINING 56 671 - -
Vvi10g0313 714 Pfam Armadillo/beta-catenin-like repeat 421 459 IPR000225 GO:0005515
Vvi10g0313 714 ProSiteProfiles U-box domain profile. 286 360 IPR003613 GO:0004842|GO:0016567
Vvi10g0313 714 CDD MLKL_NTD 56 164 - -
Vvi10g0313 714 CDD RING-Ubox_PUB 288 340 IPR045210 -
Vvi10g0313 714 SMART Ubox_2 290 353 IPR003613 GO:0004842|GO:0016567
Vvi10g0313 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 360 IPR013083 -
Vvi10g0313 714 SUPERFAMILY ARM repeat 393 669 IPR016024 -
Vvi10g0313 714 FunFam RING-type E3 ubiquitin transferase 286 361 - -
Vvi10g0313 714 Gene3D - 487 671 IPR011989 -
Vvi10g0313 714 Pfam U-box domain 287 354 IPR003613 GO:0004842|GO:0016567
Vvi10g0313 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 431 473 IPR000225 GO:0005515
Vvi10g0313 714 SUPERFAMILY RING/U-box 275 360 - -
Vvi10g0313 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 516 558 IPR000225 GO:0005515
Vvi10g0313 714 FunFam RING-type E3 ubiquitin transferase 363 684 - -
Vvi10g0313 714 Gene3D - 364 486 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0313 Vvi-Chr10 3197274 3199418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0313 1 714 U-box Gene Family AT1G29340 69.973 0.0 963
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0313 - - vvi:100253280 1345.87