Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0312 ATGACCAGGGCTGTCCGTGATAGGATTCTCAAGGATGCAAATGGTGATATTAGTGATCATCTGCGCAACCATATTCATTTGACGAATTGTATTCACCTGAAAAACCATATGCACAAGCATAGCCCCATATTGGCTGACAGGTCGATTATGAGGGACCTTATTGTCCTTCAGAGGTCACGGTCTCTTAGGGACCCTTCAACAAGTCCTCCTTCATGGCATTCGCCTTCTGTTATTGATTTGCTTTCTAAGAAAGTTGAAAATGATGCTGTGAGTCGAGAGGGGAGGAGGTCGGTTGGAATTGAGCGCCGGAGGGAGGGTAGAAGATTGTCAGGAAGCTCACCAACTGTGGCAAGTTTAGCAACATCAAAAGTTGCTCCTGGGGAGGTTGTTGGGGGCAATAATGGAATAGCAGCAATGAGTGAGCGTAGTGGCAAGAGTGGGCTTCGGGATGGTAGAAGAATTAAGAGAGAAGAATCTAGCCGGAGGAGCATGAGGACTGATCTTTTGGGCGGCTATGAAGAGCCTTCACAAGATCAGGATGGTAATGATTCAGTTAATGAACTTGTTTCTGGAAACTCCGAATCAAAAGATAAAAGAGTTAAACAGAAGGGCAAGCTTCGCCAAGAAGTTCTCCTCAAGACTCTATCTGAGCAGTTGAAGGAGTTCCCAGTGGATAGTGATGCAGCATCTTCTCATATCCATCTCCAAGGAAGACGTACCCGGAAAGAGAGAACCGGAGAGGAACCAGAAGCCAGCATCCGAGGCTACTGCAGTGGATTGAATAGGATAAAAAAGCGCAAGTTTCGAGGTGCAAGAAGAAATCGGGCTGCTATAGGCTTGAGAGATATTGGAGCTCAAAATGAATTGTCTGTGGCCTCCAATTCATTCGCTCAAGGATCAGTGTGCCTGAAGAATGAGATGGAGGAGGAAAGAGAAGAGTATGGTGAGCGAAATGTCACAAGGGCTCCTAGAAATGGGTGTGGAATTCCTTGGAATTGGTCAAGAATTCATCATAGAGGTAAAACATTCCTTGACATGGCTGGGAGGAGTTTGTCTTGTGGTTTGTCTGATTCAAGACTAAGGAGAGGGGGGTCAGTTCCCCAAGGAAGAGATGTTTCTGATATGCCTATGGCATCAGATCACTCAAGTGCATCTACTAAATCTGATGCAGAGGCACTGCCTCTACTAGTTGAGGCATCTGGATCTCAGGAAAGCACTGAAAATGCTGCTTGGGTGCATGACTATTCTGGGGAGCTGGGAATTTTTGCTGATAATCTATTGAGGCATGATATTGATTCTGACCTTGCTTCTGAAGCTAGATCTGGTGACCAACGCAAGTTTAGAGGGTACCGCCAGGATAGGCACCAGAATCTGACCCAGAAATACATGCCAAGAACGTTTGGAGGTCTAGTGGGCCAGAATTTGGTAGCACAAGCTCTTTCAAATGCTGTGGTAAAAAGGAAGGTTGGGTTTCTATATGTGTTCTATGGACCTCATGGCACTGGGAAGACCTCCTGTGCACGTATTTTTGCCAGAGCTTTAAATTGCCCGTCTATGGAACATCCCAAGCCTTGTGGCTTTTGCAATTCTTGCATTGCACATGATATGGGTAAAAGTAGAAATATAAGGGAAGTTGGCCCTGTCAGTAATTTGGACTTTGAGGGTATTATGAATCTACTCGACAATGTGATTGCTTCCCAGCTGCCAACACAGTACAGAGTGTTTATTTTTGATGACTGTGATACTCTGTCCCCTGATTGCTGGAGTGCTATATCAAAGCTCATTGATCGAGCACCTAGACGCATGGTTTTTGTTCTGGTCAGTTCAACTCTTGATGTTTTGCCTCATATCATCATATCCAGGTGCCAGAAATTCTTTTTCCCAAAGTTGAAGGATGCAGATATCATCTATACTTTGCAGTGGATTGCGACTAAAGAAGATCTCGAAATTGATAAGGATGCGCTAAAACTTATTGCATCAAGATCAGATGGATCTTTGAGGGATGCTGAGATGACTCTTGAGCAACTGAGTTTGCTTGGCCAGAGAATCTCCGTTCCTCTTGTTCAGGAGCTGGTTGGGCTTATCTCTGATGAGAAATTGGTAGATCTACTTGACTTAGCATTATCTGCTGACACGGTTAACACTGTGAAGAATTTGAGAGAAATCATGGAAACTGGTGTGGAGCCGTTAGCTTTGATGTCACAACTTGCTACAGTAATAACTGATATTCTTGCTGGTAGCTATGATTTCACTAAAGAAAGGCTTAGAAGGAAGTTCTTTCGACGACAAGCATTATCCAAAGAAGATATGGAAAAACTGCGTCAAGCTCTGAAGACTCTATCTGAAGCTGAAAAACAACTGAGGATGTCAAATGACAAACTAACATGGCTGACAGCTGCATTACTTCAACTTGCTCCTGATCAGCAGTATATGTTGCCTAGTTCTTCTGCAGACACTAGTTTTAATCACAGTCCTTTGGTTCCAAATAATGCTAGTGGAAGAGATATGGTCAGGAAAGGCAATGATTCACACAACGAGATGCCTAATACTGAGAGAAGCTTGTCAACAAATGTTAGGATAGAGAAACTCCAGGCTGGAAGTTCTGGTGACATCTTTGATAATGGTATGATGAAATCTAGTAGTATAGATAGAAAAAAACATGCTGGATCTGGGATGGCTCGTCAACAGTCATCTGCACATTCTGCTGATACAAATAGGTTAAGTGGCAAGCAGATTCCAGGTAAAGTTCGTAAAGAAATTGAAGAAATTTGGTTGGAGGTGCTTGAGAAGATTCAAGTTGATACTTTAAAAGAGTTTTTGTACAAAGAAGGAAAGCTGATTTCGGTCAGTATTGGTGCAGCTCCAACTGTGCAGTTGATGTTCAGTTCACATCTAACCAAATCCAAAGCAGAGAAGTATAGGGGGCACATCTTACGAGCTTTTGAATCTATTCTTGGGTCCCCAGTGACAATTGAAATCAGATCTGAATCAAGGAAAGATGCAAAGGCAGGGGCTCATGTGCCTCTTATCTTTTCTGCTGCTAAGGATCTTCCGTCTCAGATGGTTACAAACCGAGGAAATATCACTGATAACAGGCGGCATCAGGCAGGATATGATGATATTAACCAAAGGGTTCCAAAAGATAGAGATTTTCATGGGGGTGGTTCAGCTCAAGGTCAGCTGTTGAATGCTAACTCCCTCGAAATGGGAAGAAGTGAAATTGTTGAAATATTACCTTCTCCCAGGGAGCTGAAGTCTAATGACCATGTTGATAACAATGTTCAATCTGATAAAACAGGTTTAGAAAGTTCTTGGGCAGGGGAAGCATCATCTTCACATAGGAAATCTACCATGGCTTCTGTCCCGGAAAGAAGAAAATTTGGTGAACAAAGTCATAGTCAGAGTCTAGTACGAAGCAAGGTATCCCTTGCACATGTAATTCAACAGGCAGAAGGATGTTCCCAGCGAAGCGGATGGACAAAACGCAAAGCAGTTTCTATCGCTGAAAAGCTTGAACAAGAGAACCTGAGATTGGAACCTAGATCAAGAAGTTTGCTGTGTTGGAAGGCATCTAAAGTGACTCGTCGCAAGCTTTCACGTTTTAAAATCAGGACACGGAGACCACATTCATTGCTCAAGCTTGTCTCCTGTGGGAAATGCCTTTCTTCTAAATCCCCAAGGTAA 3684 0.4338 MTRAVRDRILKDANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRSIMRDLIVLQRSRSLRDPSTSPPSWHSPSVIDLLSKKVENDAVSREGRRSVGIERRREGRRLSGSSPTVASLATSKVAPGEVVGGNNGIAAMSERSGKSGLRDGRRIKREESSRRSMRTDLLGGYEEPSQDQDGNDSVNELVSGNSESKDKRVKQKGKLRQEVLLKTLSEQLKEFPVDSDAASSHIHLQGRRTRKERTGEEPEASIRGYCSGLNRIKKRKFRGARRNRAAIGLRDIGAQNELSVASNSFAQGSVCLKNEMEEEREEYGERNVTRAPRNGCGIPWNWSRIHHRGKTFLDMAGRSLSCGLSDSRLRRGGSVPQGRDVSDMPMASDHSSASTKSDAEALPLLVEASGSQESTENAAWVHDYSGELGIFADNLLRHDIDSDLASEARSGDQRKFRGYRQDRHQNLTQKYMPRTFGGLVGQNLVAQALSNAVVKRKVGFLYVFYGPHGTGKTSCARIFARALNCPSMEHPKPCGFCNSCIAHDMGKSRNIREVGPVSNLDFEGIMNLLDNVIASQLPTQYRVFIFDDCDTLSPDCWSAISKLIDRAPRRMVFVLVSSTLDVLPHIIISRCQKFFFPKLKDADIIYTLQWIATKEDLEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLREIMETGVEPLALMSQLATVITDILAGSYDFTKERLRRKFFRRQALSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYMLPSSSADTSFNHSPLVPNNASGRDMVRKGNDSHNEMPNTERSLSTNVRIEKLQAGSSGDIFDNGMMKSSSIDRKKHAGSGMARQQSSAHSADTNRLSGKQIPGKVRKEIEEIWLEVLEKIQVDTLKEFLYKEGKLISVSIGAAPTVQLMFSSHLTKSKAEKYRGHILRAFESILGSPVTIEIRSESRKDAKAGAHVPLIFSAAKDLPSQMVTNRGNITDNRRHQAGYDDINQRVPKDRDFHGGGSAQGQLLNANSLEMGRSEIVEILPSPRELKSNDHVDNNVQSDKTGLESSWAGEASSSHRKSTMASVPERRKFGEQSHSQSLVRSKVSLAHVIQQAEGCSQRSGWTKRKAVSIAEKLEQENLRLEPRSRSLLCWKASKVTRRKLSRFKIRTRRPHSLLKLVSCGKCLSSKSPR* 1228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0312 1227 FunFam DNA polymerase III subunit gamma/tau 631 693 - -
Vvi10g0312 1227 MobiDBLite consensus disorder prediction 891 908 - -
Vvi10g0312 1227 Gene3D - 631 693 - -
Vvi10g0312 1227 MobiDBLite consensus disorder prediction 145 168 - -
Vvi10g0312 1227 MobiDBLite consensus disorder prediction 177 191 - -
Vvi10g0312 1227 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 492 677 IPR027417 -
Vvi10g0312 1227 SUPERFAMILY post-AAA+ oligomerization domain-like 701 804 IPR008921 GO:0003677|GO:0006260
Vvi10g0312 1227 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 459 855 - -
Vvi10g0312 1227 Pfam DNA polymerase III subunits gamma and tau domain III 686 813 IPR022754 GO:0003887
Vvi10g0312 1227 NCBIfam DNA polymerase III subunit gamma/tau 456 804 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Vvi10g0312 1227 MobiDBLite consensus disorder prediction 1079 1133 - -
Vvi10g0312 1227 MobiDBLite consensus disorder prediction 881 909 - -
Vvi10g0312 1227 Gene3D - 694 806 - -
Vvi10g0312 1227 CDD HLD_clamp_pol_III_gamma_tau 630 693 IPR045085 -
Vvi10g0312 1227 MobiDBLite consensus disorder prediction 232 250 - -
Vvi10g0312 1227 MobiDBLite consensus disorder prediction 226 250 - -
Vvi10g0312 1227 Pfam DNA polymerase III, delta subunit 473 630 - -
Vvi10g0312 1227 MobiDBLite consensus disorder prediction 88 204 - -
Vvi10g0312 1227 MobiDBLite consensus disorder prediction 1093 1117 - -
Vvi10g0312 1227 MobiDBLite consensus disorder prediction 1044 1065 - -
Vvi10g0312 1227 Coils Coil 766 793 - -
Vvi10g0312 1227 Gene3D - 448 627 IPR027417 -
Vvi10g0312 1227 SMART AAA_5 489 630 IPR003593 GO:0016887
Vvi10g0312 1227 MobiDBLite consensus disorder prediction 88 109 - -
Vvi10g0312 1227 MobiDBLite consensus disorder prediction 358 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0312 Vvi-Chr10 3169764 3189706 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0312 452 684 Core DNA Replication Machinery Family AT1G77470 20.601 3.50e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0312 - - vvi:100249702 2332.37