Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0308 ATGATGTCAAGATCGTATACCAATCTTTTAGATCTAGCTTCCGGGAACTTTCCGCTGATGGGGCAAAGAAAGCGGCTGCCTCGAGTAATGACCGTTCCTGGTGTTATATCAGAGCTTGATGATGATCAAGCTAATAGTGTGACCTCAGATGTTCCATCCTCTATCGTCCAAGATCGTGTAATAATTGTAGCTAATCAGCTTCCAGTAAAAGCTAAGCGCAGGCCGGATAATAAAGGGTGGAGTTTTAGTTGGGATGAGGACTCCCTGTTATTGCAACTTAAAGATGGCTTGCCCGATGATATGGAGGTTTTGTACGTGGGGTCGTTGAGGGTTGATGTTGATTCAAATGAGCAGGATGATGTGTCGCAAGTTTTGTTGGATAGGTTCAAGTGTGTGCCTGCATTTTTACCACAGGATATTTTGTCCAAATTTTATCATGGGTTTTGTAAGCAACAGTTGTGGCCACTTTTTCATTACATGCTTCCCTTCTCGGCAAATCATGGGGGTAGATTTGATAGGTCTTTGTGGGAGGCCTATGTGTCTGCTAATAAGATCTTTTCGCAGAGGGTGATTGAGGTGTTAAACCCTGAAGATGACTATGTTTGGATTCATGATTACCATTTGATGGTGTTGCCGACCTTTTTGCGAAGACGGTTTAACAGATTGAGAATGGGTTTTTTCCTTCATAGTCCATTTCCTTCATCTGAGATATATAGGACCCTACCAGTGAGAGAAGAGATACTTAAGGCACTCTTGAATTCAGACCTTATTGGTTTCCACACTTTTGATTATGCCCGGCATTTCCTTTCTTGTTGTAGTCGGATGTTGGGTTTGGAGTATCAGTCAAAGAGGGGTTATATTGGTTTGGAATATTATGGAAGGACTGTTGGAATAAAGATTATGCCAGTTGGGGTTCACATGGGGCAGATTGAATCTGTGTTGAGATTTGCAGATAAGGAATGGCGGGTGGGAGAGCTTAAACAGCAGTTTGAGGGAAAGACTGTGCTACTGGGTGTTGATGACATGGACATCTTTAAAGGTGTCAATTTGAAGTTGTTGGCAATGGAGCAGATGCTCACACAGCATCCAAAGTGGCAAGGAAGGGCAGTGTTGGTACAGATTGCAAACCCTGCTAGGGGGAGTGGGAGAGATCTCGAGGTGATACAGGCTGAAATACAGGCAAGCTGTAAGAGAATTAATGAAAATTTTGGGCAGCCAGGTTATGAACCGATTGTATTTATTGATAGGCCAGTTTCTCTTAGTGAGAAAGCTGCATTTTACACCATTGCCGAGTGTGTCGTAGTGACAGCTGTCAGGGATGGAATGAACCTTATCCCATATGAGTATATCGTGTCCAGGCAGGGAGTCTCTGGATCTGAATCTGGTTCTGAATCAAGTGGCCCCAAGAAGAGCATGCTAGTGGTATCAGAGTTCATAGGATGCTCTCCTTCGCTGAGTGGTGCCATTAGAGTCAATCCATGGAATGTTGAAGCAACTGCTGAGGCAATGAATGAGGCAATTTCTATGGCTGATGCTGAGAAGCAATTGCGTCACGAGAAGCATTACAGGTATGTTAGTACACATGATGTGGCATATTGGTCGAAAAGTTTTTTCCAGGATATGGAGCGGTCTTGTAAAGACCATTTTAGGAGATGGTGTTGGGGAATTGGGTTGAGCTTCGGTTTCAGAGTTGTAGCCCTCGATCCTAACTTCAGAAAGTTGTCTATTGATTCTATTGTATCTGCATATTCAAGGGCCAAAAATAGGGCCATCCTTTTGGATTATGATGGGACTGTAATGCCTCAGACATCCATCAATAAGACTCCAAGTGAAGATGTTATCTTAATCTTGAACACGCTTTGTAGTGACCCTAGAAATACAGTGTTTGTTGTTAGTGGAAGGGGAAGGGATAGCTTAGGCAAGTGGTTTTCTCCTTGCAACAGGCTTGGAATTGCAGCAGAACATGGATACTTCTTAAGGTGGTCTGTGAATGAAGAATGGGAAATCTGTGGTCAGAGTAATGATTTTGGGTGGATACAGATGGCTGAGCCTGTAATGAAATTGTACACAGAAGCTACTGATGGTTCTTATATTGAAACCAAGGAGAGTGCCTTGGTTTGGCACCATCAGGATGCAGACCCAGGTTTTGGCTCTAGCCAGGCCAAGGAGATGTTAGACCATCTAGAAAGTGTGCTAGCAAATGAACCTGTTGCTGTGAAAAGTGGTCAATTCATTGTAGAAGTGAAGCCACAGGGCATCAGTAAAGGTGTGGTTGCGGAAAAGATCTTCACTTCAATGGCAGAGAGGGGAAGGCAGGCTGATTTTGTGTTGTGTGTAGGTGATGACAGATCTGATGAGCATATGTTTGAAATCATTGGTAATGCAGTATCGAGTGGGATCCTCTCCTCTAATACATCAGTTTTTGCCTGCACGGTTGGACAGAAACCAAGTAAAGCCAAGTACTATTTGGATGACACAACTGAGGTCATAAACATGCTTGATGCTCTTGCTGATGCTTCAGACCCTTCCCCATCTCCCGAACTTGAAGCAAGCTCTCCTTGA 2562 0.4372 MMSRSYTNLLDLASGNFPLMGQRKRLPRVMTVPGVISELDDDQANSVTSDVPSSIVQDRVIIVANQLPVKAKRRPDNKGWSFSWDEDSLLLQLKDGLPDDMEVLYVGSLRVDVDSNEQDDVSQVLLDRFKCVPAFLPQDILSKFYHGFCKQQLWPLFHYMLPFSANHGGRFDRSLWEAYVSANKIFSQRVIEVLNPEDDYVWIHDYHLMVLPTFLRRRFNRLRMGFFLHSPFPSSEIYRTLPVREEILKALLNSDLIGFHTFDYARHFLSCCSRMLGLEYQSKRGYIGLEYYGRTVGIKIMPVGVHMGQIESVLRFADKEWRVGELKQQFEGKTVLLGVDDMDIFKGVNLKLLAMEQMLTQHPKWQGRAVLVQIANPARGSGRDLEVIQAEIQASCKRINENFGQPGYEPIVFIDRPVSLSEKAAFYTIAECVVVTAVRDGMNLIPYEYIVSRQGVSGSESGSESSGPKKSMLVVSEFIGCSPSLSGAIRVNPWNVEATAEAMNEAISMADAEKQLRHEKHYRYVSTHDVAYWSKSFFQDMERSCKDHFRRWCWGIGLSFGFRVVALDPNFRKLSIDSIVSAYSRAKNRAILLDYDGTVMPQTSINKTPSEDVILILNTLCSDPRNTVFVVSGRGRDSLGKWFSPCNRLGIAAEHGYFLRWSVNEEWEICGQSNDFGWIQMAEPVMKLYTEATDGSYIETKESALVWHHQDADPGFGSSQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQGISKGVVAEKIFTSMAERGRQADFVLCVGDDRSDEHMFEIIGNAVSSGILSSNTSVFACTVGQKPSKAKYYLDDTTEVINMLDALADASDPSPSPELEASSP* 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0308 853 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 588 705 - -
Vvi10g0308 853 FunFam Alpha,alpha-trehalose-phosphate synthase 313 526 - -
Vvi10g0308 853 NCBIfam trehalose-phosphatase 586 837 IPR003337 GO:0003824|GO:0005992
Vvi10g0308 853 SUPERFAMILY HAD-like 589 837 IPR036412 -
Vvi10g0308 853 Pfam Trehalose-phosphatase 592 826 IPR003337 GO:0003824|GO:0005992
Vvi10g0308 853 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 718 849 - -
Vvi10g0308 853 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 52 311 - -
Vvi10g0308 853 Gene3D - 588 703 IPR023214 -
Vvi10g0308 853 Gene3D - 717 845 IPR023214 -
Vvi10g0308 853 NCBIfam HAD-IIB family hydrolase 591 796 IPR006379 -
Vvi10g0308 853 CDD GT20_TPS 59 542 IPR001830 GO:0003824|GO:0005992
Vvi10g0308 853 CDD HAD_TPP 590 831 - -
Vvi10g0308 853 Pfam Glycosyltransferase family 20 59 542 IPR001830 GO:0003824|GO:0005992
Vvi10g0308 853 Gene3D Glycogen Phosphorylase B; 312 526 - -
Vvi10g0308 853 Gene3D Glycogen Phosphorylase B; 53 311 - -
Vvi10g0308 853 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 27 838 IPR001830 GO:0003824|GO:0005992
Vvi10g0308 853 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 58 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0308 Vvi-Chr10 3105995 3112850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0308 1 843 Trehalose Biosynthesis Gene Families AT1G06410 77.251 0.0 1382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0308 K16055 - vvi:100265140 1663.28