Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0301 ATGGACGGCAGATTCAACAGTAACCCATTTGTTAGTGAACAAGAAGAGCAGGAAAACTCACCGGAAAATAGTGGAGACTCGCCACCTTCTCCTATGTTTAATGATGCAAAGATCTCTTCTTCTACGTCTTCCCCCAAACGAAGTAGGCGAGCCATGCAAAAGAGAGTGGTGTCAGTGCCCATCAAGGATGTGGAAGGCTCACGAGTCAAGGGGGACTGTGCTCCACCATCCGATTCATGGGCTTGGAGGAAGTATGGTCAGAAGCCCATCAAAGGCTCTCCATATCCCAGAGGGTATTACAGGTGCAGCAGTTCAAAAGGCTGCCCAGCTAGGAAGCAAGTTGAGAGAAGCCGCGTGGACCCCACCATGCTTGTTGTGACGTACTCTTGCGAACACAACCATCCATGGCCGGCTTCTAGAAACCACCACAACACCACCAATCCCCCCACCACGGCGGCCGCCACCCCTACTCCCACCTCGGCGCCTGCTACTCCTCCCTCACCCAAACCAGCAATTTTCTCAAGCCAAGCCGAACCCGACCCGGACGAAAAGTTCACTGACCTAGGCGAGGAATCGCTGATCACAACCGAAGATTTCACCTGGTTTTCGGACTTCGAATCCCCCTCTTCCACGATGCTGGAGAGCCCGATTTTCGCGGAGAACAATGTCAGAGACGCCGACGTGGCGATGTTCTTCCCGATGAGGGAAGAGGATGAATCGCTGTTCGCCGATCTCGGGGAGTTGCCGGAGTGTTCTCTTGTGTTTCGGCGAGGGGTATTGGAGATGGAGGAGGAGCGCCGACGGTGTACGGTACCCATGTGTGGGACCACAAGCTGA 837 0.5448 MDGRFNSNPFVSEQEEQENSPENSGDSPPSPMFNDAKISSSTSSPKRSRRAMQKRVVSVPIKDVEGSRVKGDCAPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTMLVVTYSCEHNHPWPASRNHHNTTNPPTTAAATPTPTSAPATPPSPKPAIFSSQAEPDPDEKFTDLGEESLITTEDFTWFSDFESPSSTMLESPIFAENNVRDADVAMFFPMREEDESLFADLGELPECSLVFRRGVLEMEEERRRCTVPMCGTTS* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0301 278 MobiDBLite consensus disorder prediction 1 47 - -
Vvi10g0301 278 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 15 253 IPR044810 GO:0003700
Vvi10g0301 278 SUPERFAMILY WRKY DNA-binding domain 73 137 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi10g0301 278 ProSiteProfiles WRKY domain profile. 71 137 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi10g0301 278 MobiDBLite consensus disorder prediction 135 185 - -
Vvi10g0301 278 SMART WRKY_cls 76 136 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi10g0301 278 MobiDBLite consensus disorder prediction 139 158 - -
Vvi10g0301 278 FunFam WRKY transcription factor 65 58 137 - -
Vvi10g0301 278 Pfam WRKY DNA -binding domain 78 135 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi10g0301 278 Gene3D WRKY domain 64 138 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi10g0301 278 MobiDBLite consensus disorder prediction 1 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0301 Vvi-Chr10 3008946 3010008 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0301 16 256 WRKY Transcription Factor Family AT1G29280 56.452 2.11e-86 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi10g0301 WRKY 3.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0301 - - vvi:100244564 526.168