Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0290 ATGATGGAAGGGGAGGCGCATGATCCGCGGATCGGCGATAAGGTGGACCGAGTTGAGGGGGGGATTCGTGAGAGTTCGAGTGCTGAGCCTGTGCCTGAGACGGTAATTATGATAACTCCGGCGGAGCCGGACGCAGAGGAGCGGCGGGGGAGCAGCGGAGGAAGTGGAAGTGACAAAGCGAAAGCGGAAGCGGAGGCGGAGGCGGAGACGGAGTCGAAGGCTAGTGTGAAGGAGGTGAATTCATGCGTCGTGGATGTGAAGTGCGGCGGCGGTGGAGGTGGAGGAGGGCTTGTGGAGAATTGGGATGGAGAAAGGGTGTGTAGGATTTGCCATTTGAGTTCAGACCCAGCGGCGGAGGGCTCTATTGCTACTTGCCGTGATGCTAGTGCGGATCTAATCCAGCTTGGTTGCGGTTGTAAAGATGAGCTCGGGATTTCGCATCCTCATTGTGCTGAGGCCTGGTTTAAGCTCAAAGGAAACAGAATGTGCGAAATTTGTGGTGAGACTGCAAATAATGTCAAAGGTGTCTGGGACAACAGATTCATGGAGGATTGGAATGAGAGGAGGTATGCCGGTAGCAGTAGTAACTCTTCAGACAGGGGTGGCGGATGTTGGCGGGGGCAGCCATTTTGTAACTTCCTGATGGCATGCCTGGTAATAGCCTTTGTGCTGCCATGGTTTTTTCGTGTAAATATGTTTTAA 702 0.537 MMEGEAHDPRIGDKVDRVEGGIRESSSAEPVPETVIMITPAEPDAEERRGSSGGSGSDKAKAEAEAEAETESKASVKEVNSCVVDVKCGGGGGGGGLVENWDGERVCRICHLSSDPAAEGSIATCRDASADLIQLGCGCKDELGISHPHCAEAWFKLKGNRMCEICGETANNVKGVWDNRFMEDWNERRYAGSSSNSSDRGGGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0290 233 SUPERFAMILY RING/U-box 104 169 - -
Vvi10g0290 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 176 IPR013083 -
Vvi10g0290 233 MobiDBLite consensus disorder prediction 1 23 - -
Vvi10g0290 233 ProSiteProfiles Zinc finger RING-CH-type profile. 99 173 IPR011016 GO:0008270
Vvi10g0290 233 PANTHER ZINC FINGER, RING-CH-TYPE 33 233 - -
Vvi10g0290 233 MobiDBLite consensus disorder prediction 42 72 - -
Vvi10g0290 233 SMART ringv_2 106 167 IPR011016 GO:0008270
Vvi10g0290 233 MobiDBLite consensus disorder prediction 1 72 - -
Vvi10g0290 233 Pfam RING-variant domain 107 166 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0290 Vvi-Chr10 2908713 2910288 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0290 27 232 C3H Transcription Factor Family AT5G05830 35.455 6.83e-31 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0290 - - vvi:100254917 431.409