Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0289 ATGGGTGGAGCCTCCATTAGTCTTCTCTCTCCCAAGGGGGTTAACTATGAAGTGGCCGCTTTGATGGCAATGAAGAATAAGATGAATGATGAGTCGAATGTGCTTGATGGGTGGGATATTAACTCTGTTGATCCCTGTACTTGGAACATGGTGGGTTGCACTCCTGAGGGTTTCGTCATTTCTCTCTCTATGTCTAGCGTGGGCTTATCGGGAACCCTTTCTCCCAGTATTGGGAATTTGAGTCATCTCCGTTCATTGTGGTTACAGAACAATCAATTATCTGGTCCTATCCCTGTTGAGATTGGGAAGCTTTCTGCGCTTCAAACTCTCGACCTTTCAGATAACCAGTTCATTGGTGAAATTCCAAGCTCATTGGGCTTGCTGACTCATCTAAATTACTTGCGGCTTAGTAGAAACAAGTTGTCTGGACAGATCCCTGGGCTTGTTGCAAATCTTACAGGTCTTTCATTCTTGGACTTATCATTCAACAATCTCAGTGGTCCCACTCCAAACATACTGGCAAAAGACTACAGTATTACAGGGAACAATTTCCTATGCACTTCATCATCTGCCCAAACGTGCATGCGTGTTGCAAAACCAATAAATGGCACAAGTTCATCTGAGAAAGTTAGTGGTCATCATCGATGGGTGGTTTCTGTTGCCATAGGTGTCAGCTGCACATTTCTGGTTTCTATGACTCTGCTTGTCTGTTTGGTGCATTGGTGCAGGTCTCGTCTCCTGTTTACATCATATGTGCAGCAAGATTATGAATTTGATATCGGTCATCTTAAGAGGTTTTCGTTTCGTGAACTACAAATTGCTACGAGCAATTTTAGTCCCAAAAACATCTTAGGACAAGGTGGATTTGGAGTGGTTTATAAAGGGTATCTTCCAAATAGGACAATCGTGGCTGTTAAAAGGCTGAAAGATCCCAATTTCACTGGAGAAGTGCAATTTCAAACAGAAGTTGAGATGATTGGGTTGGCCCTGCACCGAAACCTCTTACGTTTGTATGGTTTCTGTATGACATCGGATGAAAGGTTGCTTGTTTATCCTTATATGCCAAATGGGAGTGTTGCTGATCGCTTGAGAGACACAGGTCGAGAAAAACCATCTTTAGATTGGAACAGACGCATGCACATCGCTCTTGGGGCTGCCCGTGGACTGTTATACTTACATGAACAATGTAATCCAAAAATAATTCATAGGGATGTAAAAGCAGCAAATATTTTGCTTGATGAAAATTTTGAGTCTGTAGTTGGGGATTTTGGCCTTGCCAAGCTGTTAGACAGGAGGGATTCACATGTTACCACTGCAGTTCGGGGTACAGTGGGACACATCGCCCCTGAGTATCTTTCAACTGGACAGTCCTCGGAGAAAACTGATGTCTTTGGATTCGGGATCTTACTTTTGGAACTCATAACAGGGCCAAAGGCATTAGATGCTAGAAATGGTCAGGTTCAGAAGGGTATGATTCTTGACTGGGTTAGAACTCTGCAGGAGGAGAAGAGGCTTGAAGTGCTGATAGATAGGGATCTGAAGGGATGCTTCGACACAGAAGAGCTTGAAAAAGCTGTAGGGCTTGCTCAGCTGTGCACTCAACCCCATCCCAACCTCAGGCCCAAGATGTCTGAAGTGTTGAAGGTCCTGGAAAGTATGGTTGGGCAGTCTGGACATGCGGAGGAGGAATCACAAGGAGGAGGAGGAACCCTCAATGGTGAGGGAAGGGCTTGTAGTCTCTCCAGGAATTACAGTGAAGCCAATGAGGAATCTTCATTCATCATTGAAGCAATAGAGCTGTCTGGACCACGGTGA 1815 0.4463 MGGASISLLSPKGVNYEVAALMAMKNKMNDESNVLDGWDINSVDPCTWNMVGCTPEGFVISLSMSSVGLSGTLSPSIGNLSHLRSLWLQNNQLSGPIPVEIGKLSALQTLDLSDNQFIGEIPSSLGLLTHLNYLRLSRNKLSGQIPGLVANLTGLSFLDLSFNNLSGPTPNILAKDYSITGNNFLCTSSSAQTCMRVAKPINGTSSSEKVSGHHRWVVSVAIGVSCTFLVSMTLLVCLVHWCRSRLLFTSYVQQDYEFDIGHLKRFSFRELQIATSNFSPKNILGQGGFGVVYKGYLPNRTIVAVKRLKDPNFTGEVQFQTEVEMIGLALHRNLLRLYGFCMTSDERLLVYPYMPNGSVADRLRDTGREKPSLDWNRRMHIALGAARGLLYLHEQCNPKIIHRDVKAANILLDENFESVVGDFGLAKLLDRRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGPKALDARNGQVQKGMILDWVRTLQEEKRLEVLIDRDLKGCFDTEELEKAVGLAQLCTQPHPNLRPKMSEVLKVLESMVGQSGHAEEESQGGGGTLNGEGRACSLSRNYSEANEESSFIIEAIELSGPR* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0289 604 MobiDBLite consensus disorder prediction 555 574 - -
Vvi10g0289 604 FunFam Putative LRR receptor-like serine/threonine-protein kinase 14 196 - -
Vvi10g0289 604 Gene3D Ribonuclease Inhibitor 14 196 IPR032675 -
Vvi10g0289 604 FunFam Somatic embryogenesis receptor-like kinase 1 354 565 - -
Vvi10g0289 604 ProSitePatterns Serine/Threonine protein kinases active-site signature. 400 412 IPR008271 GO:0004672|GO:0006468
Vvi10g0289 604 SUPERFAMILY Protein kinase-like (PK-like) 260 551 IPR011009 -
Vvi10g0289 604 Pfam Protein kinase domain 281 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0289 604 FunFam Somatic embryogenesis receptor kinase 1 247 353 - -
Vvi10g0289 604 Pfam Leucine rich repeat N-terminal domain 15 53 IPR013210 -
Vvi10g0289 604 Gene3D Phosphorylase Kinase; domain 1 248 353 - -
Vvi10g0289 604 ProSitePatterns Protein kinases ATP-binding region signature. 284 306 IPR017441 GO:0005524
Vvi10g0289 604 SMART serkin_6 278 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0289 604 ProSiteProfiles Protein kinase domain profile. 278 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0289 604 SMART LRR_typ_2 128 151 IPR003591 -
Vvi10g0289 604 SMART LRR_typ_2 152 175 IPR003591 -
Vvi10g0289 604 SMART LRR_typ_2 80 104 IPR003591 -
Vvi10g0289 604 SUPERFAMILY L domain-like 16 180 - -
Vvi10g0289 604 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 15 549 - -
Vvi10g0289 604 Gene3D Transferase(Phosphotransferase) domain 1 354 563 - -
Vvi10g0289 604 ProSiteProfiles Leucine-rich repeat profile. 106 128 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0289 Vvi-Chr10 2894893 2902502 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0289 22 604 Receptor kinase-like Gene Family AT5G45780 73.288 0.0 848
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vvi10g0289 Pkinase 3.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0289 - - vvi:100854996 1201.42