Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0288 ATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATTGTTTTTCAGGCAAAATGCTTGGAAACTGGAGAGACTGTGGCCATAAAGAAGGTTTTGCAGGACAGAAGATATAAGAATCGTGAGCTGCAGTTAATGCGCACGATGGATCATCCAAATGTCATTTCCCTAAAACATTGTTTCTTTTCTACTACAAGTAGAGATGAACTTTTCCTCAACTTGGTAATGGAATATGTCCCTGAGACCATGTATCGGGTCTTGAAGCACTACAGCAACGCAAAACAGCGAATGCCTCTTATATATGTGAAACTTTACACTTACCAAATTTTCAGGGGCCTGGCATATATCCACAGTGTTCCTGGAGTTTGCCATAGGGATTTGAAGCCTCAAAATCTTCTAGTTGATCCACTTACTCACCAAGTTAAGCTTTGTGACTTTGGAAGTGCAAAAGTGCTAGTTAAAGGTGAAGCAAACATATCATACATATGTTCTCGTTTCTACCGAGCACCTGAACTCATATTTGGGGCCACAGAGTATACAACCTCAATTGATATATGGTCAGCTGGTTGTGTCCTAGCTGAGCTTCTTCTAGGCCAGCCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTATACTGATTTTAGGTTTCCACAGATAAAAGCACACCCTTGGCACAAGGTCTTTCACAAACGAATGCCTCCTGAAGCAATCGATCTTGCTTCTCGACTTCTGCAATACTCACCAAGTCTTCGCTGCACAGCTCTAGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCCCGCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAATTATCTGGGGCTTCTCCTGAGCTTGTTAATAAGTTGATACCGGAGCATGTGAGGAGGCAAATAGGCCTAAGTTTTTTCCACCCAGCAGGCACATAA 1023 0.4379 MAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRTMDHPNVISLKHCFFSTTSRDELFLNLVMEYVPETMYRVLKHYSNAKQRMPLIYVKLYTYQIFRGLAYIHSVPGVCHRDLKPQNLLVDPLTHQVKLCDFGSAKVLVKGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCMNPSYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPLPPLFNFKQELSGASPELVNKLIPEHVRRQIGLSFFHPAGT* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0288 340 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Vvi10g0288 340 ProSiteProfiles Protein kinase domain profile. 1 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0288 340 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 329 - -
Vvi10g0288 340 SMART serkin_6 1 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0288 340 SUPERFAMILY Protein kinase-like (PK-like) 3 309 IPR011009 -
Vvi10g0288 340 Gene3D Transferase(Phosphotransferase) domain 1 80 327 - -
Vvi10g0288 340 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Vvi10g0288 340 FunFam Shaggy-related protein kinase kappa 80 327 - -
Vvi10g0288 340 CDD STKc_GSK3 3 287 IPR039192 -
Vvi10g0288 340 Pfam Protein kinase domain 3 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0288 340 ProSitePatterns Protein kinases ATP-binding region signature. 6 30 IPR017441 GO:0005524
Vvi10g0288 340 FunFam Glycogen synthase kinase-3 beta 1 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0288 Vvi-Chr10 2889931 2893108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0288 4 322 MAP Kinase Gene Family AT3G59790 35.629 3.35e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vvi10g0288 Pkinase 2.2e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0288 K14502 - vvi:100855030 697.967