Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0283 ATGGAGATGTTTTGGAGATTGTTGCTTGTGCTCTCCTTGGTAATGGTAGTGGCTGCAGAATCTACATGCAACAGTACTACAGACTCGAAGCTGGTTCTCAAGGCATTTAAAGGCGTCACTGGATTCAACTCTTCTTGGGTTAAATCTCATGATCATGGGAACTGTTCGAGCCCTCCAATGAGGGAACTGAAGTTTTCTTCGCGTAATCTGAGCGGGACTATTTCATGGGAGTTCCTCAGGAACATGTCTCAGTTGCAGGCCATCGATCTTTCCCACAATTCCCTCAGAGGGCATGTTCCTGGTTGGTTTTGGTCGATTCGGAGCCTGGTTAAGGTCAATCTGTCCCAGAATCGGTTTGGGGGAAGCGTTGGGTTTGAAGGATTAGGTTCGACTTCGTCGATGCAGGTGCTGAATCTATCGGACAATCGGTTCACCAACTTGGTACGGCTCTCTGGTTTTCAAGCACTTACAGTTCTTGACCTTTCGAATAACGATCTGAGAGTTTTGCCTTCTGGGTTTGAGAACCTCACTAAGCTTGAGCACCTTGACATCTCAAGCTGCAATATTTCAGGCAATTTGAAGCCCATTTCAAGTCTTCGGCGATTGACACACTTGGATGTGTCTGATAACAACATGAATGGTACGTTCCCTTCTGATTTCCCTCCGCTCATCGGACTCAGGTTCTTGAACGTCTCATTGAACAAGTTCACCGGACTGATTGGATCCGAGTTCCACAAAAAATTTGGCAACTCTGCGTTCATTCATGCTGGCAATTTCAATGTCTCCAAAACTGCAACCCCTCCGATTGGACCCCATTCCACTCCCCTACCTCACAAACCCCTCCTAGAACTTCGACCCCATTCCTCTACCCCACCTCACAAACCCCTCCCAGAACACCTCGCGAAGAAGAAACGCAAATCAAAACCTAAACTTCTAGTCTTGTCTTTGTCGTGTGCATCAGCATTCCTGGTCCTGGCCATGGCTATCTGTACGTATTGCATGTACAGGAGAAGGAAGCTGAAGCGAAGAAACAGATGGGCAATCTCGAAGCCGATGCAGGCTGAGTTCAAAATGGAGAAATCAGGACCCTTCTCTTTCGAGACAGAGTCAGGCACATCATGGGTGGCCGACATCAAGGAACCATCCTCAGCTCCGGTGGTGATGTTCGAAAAACCGCTGATGAACCTCACATTCAAGGACCTCATCGCTGCCACGTCACACTTCGGCAAGGAGTCACAGCTAGCTGAGGGCAGATGTGGGCCAGTCTACAGAGCTGTCCTCCCAGGAGACATCCACGTGGCAATCAAAGTGCTGGAAAACGCGAGATCCGTTGACCACAACGACGCTGTACCCATGTTTGAATCTCTGGCGAGGCTCAAGCACCCCAACCTTCTTCCTCTCTCCGGTTACTGCATTGCAGGTAGAGAGAAGCTGGTGTTGTACGAGTTCATGGCCAACGGCGACTTGCACCGGTGGCTCCACGAGCTTCCCACCGGCGCGCCCAACGTGGAGGACTGGAGCACTGATACGTGGGAGCATATCAATGACGGAGAAAGTGTTTCCCGTGCCTCGTCTCCGGAAAAGATGGAATGGCGGACTCGTCACCGCATTGCTGTCGGAGTGGCGCGTGGGCTCGCCTACCTCCACCATGCAGGTTCCAAGCCCATCTTCCACGGCCATCTCGTCGCCTCCAACGTCCTCCTCGCCGACGACTTCGAGCCCCGAATCGCGGATTTCGGCCTTCGGCGGGACAGAGATATCGGGAACACCGAAGCTGATGTGTACTGTTTCGGCGTCGTGTTGATAGAGCTCCTAACGGGTAAGCCCGGGTCGGAAGAGACCATTGCATGGGCAAGGAAGCTGGTGAAGGACAGACTCGGAGTGAACGCGTTGGACCCGAGGCTGGGAGTCGGTGGCGACTCAGTGAGCGAGATGGTAGAGTGTCTCCGAGTTGGATACTTATGTACGGCCGAGTCACCTGGGAAAAGACCCACAATGCAACAGGTTGTGGGTCTGCTCAAAGACATACATCCTGGGCCTGAATTGAATTGA 2052 0.519 MEMFWRLLLVLSLVMVVAAESTCNSTTDSKLVLKAFKGVTGFNSSWVKSHDHGNCSSPPMRELKFSSRNLSGTISWEFLRNMSQLQAIDLSHNSLRGHVPGWFWSIRSLVKVNLSQNRFGGSVGFEGLGSTSSMQVLNLSDNRFTNLVRLSGFQALTVLDLSNNDLRVLPSGFENLTKLEHLDISSCNISGNLKPISSLRRLTHLDVSDNNMNGTFPSDFPPLIGLRFLNVSLNKFTGLIGSEFHKKFGNSAFIHAGNFNVSKTATPPIGPHSTPLPHKPLLELRPHSSTPPHKPLPEHLAKKKRKSKPKLLVLSLSCASAFLVLAMAICTYCMYRRRKLKRRNRWAISKPMQAEFKMEKSGPFSFETESGTSWVADIKEPSSAPVVMFEKPLMNLTFKDLIAATSHFGKESQLAEGRCGPVYRAVLPGDIHVAIKVLENARSVDHNDAVPMFESLARLKHPNLLPLSGYCIAGREKLVLYEFMANGDLHRWLHELPTGAPNVEDWSTDTWEHINDGESVSRASSPEKMEWRTRHRIAVGVARGLAYLHHAGSKPIFHGHLVASNVLLADDFEPRIADFGLRRDRDIGNTEADVYCFGVVLIELLTGKPGSEETIAWARKLVKDRLGVNALDPRLGVGGDSVSEMVECLRVGYLCTAESPGKRPTMQQVVGLLKDIHPGPELN* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0283 683 ProSiteProfiles Protein kinase domain profile. 408 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0283 683 Gene3D Ribonuclease Inhibitor 125 259 IPR032675 -
Vvi10g0283 683 Gene3D Ribonuclease Inhibitor 30 124 IPR032675 -
Vvi10g0283 683 Gene3D Transferase(Phosphotransferase) domain 1 588 679 - -
Vvi10g0283 683 FunFam Putative LRR receptor-like serine/threonine-protein kinase 369 483 - -
Vvi10g0283 683 Gene3D Phosphorylase Kinase; domain 1 368 483 - -
Vvi10g0283 683 Pfam Protein tyrosine and serine/threonine kinase 411 585 IPR001245 GO:0004672|GO:0006468
Vvi10g0283 683 Gene3D Transferase(Phosphotransferase) domain 1 484 587 - -
Vvi10g0283 683 Pfam Leucine Rich repeat 200 214 IPR001611 GO:0005515
Vvi10g0283 683 SUPERFAMILY L domain-like 53 245 - -
Vvi10g0283 683 SUPERFAMILY Protein kinase-like (PK-like) 398 675 IPR011009 -
Vvi10g0283 683 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 50 676 - -
Vvi10g0283 683 ProSiteProfiles Leucine-rich repeat profile. 155 177 IPR001611 GO:0005515
Vvi10g0283 683 Pfam Leucine rich repeat 68 119 IPR001611 GO:0005515
Vvi10g0283 683 Pfam Leucine rich repeat 133 189 IPR001611 GO:0005515
Vvi10g0283 683 SMART LRR_typ_2 82 105 IPR003591 -
Vvi10g0283 683 SMART LRR_typ_2 223 246 IPR003591 -
Vvi10g0283 683 SMART LRR_typ_2 153 175 IPR003591 -
Vvi10g0283 683 MobiDBLite consensus disorder prediction 265 304 - -
Vvi10g0283 683 FunFam Calmodulin-binding receptor kinase CaMRLK 132 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0283 Vvi-Chr10 2817923 2820271 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0283 65 676 Receptor kinase-like Gene Family AT5G07280 31.307 7.07e-73 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Vvi10g0283 PK_Tyr_Ser-Thr 5e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0283 - - vvi:100261772 1364.75