Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0281 ATGGAGGAATTGAGTCCATGTTCAGAAGCATGTGGACCAGCAATCCCCATGGAGGCCACCCACCACTACGTGCCTCTCTCTCCGTACGAGATGGGGAGAATGCTTGGGCAAGGGACTTTTGCCAAGGTTTACCATGCTCGGAACCTCAAGTCCGGTCAGAGTGTTGCCATAAAGATGATTGACAAAGAGAAGGTGTTGAAGGTGGGGTTGATAGATCAAATCAAGAGGGAGATCTCGGTGATGCGCCTTGTTCGACACCCTAATGTTGTTCAACTCTATGAGGTCATGGCGAGCAAGACCAAGATTTATTTTGTCATGGAGTATGTCAAAGGTGGAGAGCTGTTCAACAAGGTGGCGAAAGGCAAACTCAAGGAAGACGCGGCTCGCAAGTATTTCCAGCAATTGATTGGAGCTGTTGACTTCTGCCATAGCCGAGGAGTCTACCACCGCGACCTCAAGCCGGAGAATCTCCTCCTTGACGAGAATGGAGACCTTAAAGTAACCGATTTTGGCTTGAGTGCGCTGTGGGACTCAAGGAGGCATGATGGCCTCCTCCACACTACTTGTGGAACTCCAGCTTATGTGGCTCCGGAGGTCATCAACAAGAAGGGCTATGATGGAGCCAAGGCAGACATGTGGTCATGTGGCGTCATTCTCTTCGTTCTCATGGCTGGTTTTCTCCCTTTCCATGACCCTAATCTCATGGAAATGTACAGGAAGATCAGCAGAGGTGAATTCAAGTGCCCACAATGGTTCCCACTGGAGGTCCGGAAGCTTCTTTCTAAAATTCTCGACCCCAGCCCCAGCACTAGAATAACTGTGGCCAAGCTCATGGACAACCCTTGGTTCAAGAAGGGATTCAAACCGATTGTAGCCCCACAACCCAATCGAAATGATTCGATGAGCGATGTCCGTGCTGTATTTGCCACACATCCAGAAGGAACTTCTGAGGAGGAAGCCGAGGAAACAACAAGCAGCATGAAGCCAACTTGTTTGAATGCCTTCGATATCATCTCTCTCTCACCCGGGTTTGATCTGTCAGGTCTGTTTGAGAAAGATACCAATCATAGGCCAGACGCTCGGTTCACCACCAAACAGCCTGCATCAACCATTGTATCCAAACTGGAAGAAATAGCAGAAATGGAGAGATTTAAGGTTAAGAAAAAGGATGGGACGGTGAAGTTGCAAGGCAGCAAGGAAGGGAGAAAGGGTCAGCTTGCTATAGATGCTGAAATTTTCGAGGTCACGCCTTCACTTTTCGTGGTGGAGGTGAAGAAAACGGCAGGTGACACCTTGGAGTATAAGAAGTTCTGTAACCAAGATTTGAAGCCTTCACTCAAGGATATCGTATGGACTTGGCAAGGAAGTGAGCAGCAGCAGGAGCAACAGCCACAACCACAATAG 1404 0.4886 MEELSPCSEACGPAIPMEATHHYVPLSPYEMGRMLGQGTFAKVYHARNLKSGQSVAIKMIDKEKVLKVGLIDQIKREISVMRLVRHPNVVQLYEVMASKTKIYFVMEYVKGGELFNKVAKGKLKEDAARKYFQQLIGAVDFCHSRGVYHRDLKPENLLLDENGDLKVTDFGLSALWDSRRHDGLLHTTCGTPAYVAPEVINKKGYDGAKADMWSCGVILFVLMAGFLPFHDPNLMEMYRKISRGEFKCPQWFPLEVRKLLSKILDPSPSTRITVAKLMDNPWFKKGFKPIVAPQPNRNDSMSDVRAVFATHPEGTSEEEAEETTSSMKPTCLNAFDIISLSPGFDLSGLFEKDTNHRPDARFTTKQPASTIVSKLEEIAEMERFKVKKKDGTVKLQGSKEGRKGQLAIDAEIFEVTPSLFVVEVKKTAGDTLEYKKFCNQDLKPSLKDIVWTWQGSEQQQEQQPQPQ* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0281 467 SUPERFAMILY Protein kinase-like (PK-like) 26 331 IPR011009 -
Vvi10g0281 467 FunFam Non-specific serine/threonine protein kinase 327 451 - -
Vvi10g0281 467 Gene3D Phosphorylase Kinase; domain 1 19 108 - -
Vvi10g0281 467 Gene3D Kinase associated domain 1, KA1 326 452 - -
Vvi10g0281 467 ProSiteProfiles NAF domain profile. 327 351 IPR018451 GO:0007165
Vvi10g0281 467 ProSiteProfiles Protein kinase domain profile. 29 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0281 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Vvi10g0281 467 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 28 447 - -
Vvi10g0281 467 Pfam Protein kinase domain 29 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0281 467 Pfam NAF domain 329 388 IPR004041 GO:0007165
Vvi10g0281 467 FunFam Non-specific serine/threonine protein kinase 21 108 - -
Vvi10g0281 467 Gene3D Transferase(Phosphotransferase) domain 1 109 289 - -
Vvi10g0281 467 SMART serkin_6 29 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0281 467 CDD CIPK_C 333 447 - -
Vvi10g0281 467 ProSitePatterns Protein kinases ATP-binding region signature. 35 58 IPR017441 GO:0005524
Vvi10g0281 467 FunFam Non-specific serine/threonine protein kinase 20 326 - -
Vvi10g0281 467 CDD STKc_SnRK3 29 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0281 Vvi-Chr10 2789114 2791814 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0281 24 455 CBL-interacting serine-threonine protein kinases AT5G45820 69.178 0.0 621
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vvi10g0281 Pkinase 5.1e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0281 K07198 - vvi:100258329 847.425