Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0279 ATGGGGGGTAGATGGAACGCTTTTGGATTCCAGTTCTTAATATTTTCAGTTCTGATCATCTTTTTGGGAATTCAAAGGTGTTGGTCGCTTAATTCTGAAGGATTGGCTTTGCTGGAATTCCGGGCAGGAGTGGACTCTGATCCATATGGCGCCTTTTCCAATTGGAATTCCAGTGACAGTGATGGTTGCATGTGGTTGGGTGTTCACTGTTATGACAGTAAAGTGCAAACACTGGATTTGAATGGGCTTTCTTTGGAAGGAATACTGGCTCCTGGGCTTGGGAAACTTAGTCACTTAAGATCCCTTGTACTCCACAAGAACAATTTCTCTGGTACCATTCCTAAAGAGATTGGAGGACTTATAAGGTTGGAGCTATTGGACCTGAGGGATAATAACTTGAGTGGAGTAATTCCAGAAGAAATAGGCTCAATGCCTTCACTGAAACGCTTATTGCTTTGTGACAATAAATTTGAAGGAAGCATTCCTATGGATGCTGGGAAGCTCAATTTGCTCTCTGAATTGCAATTTGATGAAAACCTTACATCTCCTGTTGCCAGTGGAACTGGTTTTGCAAATAGAAAATTTGGACACTGCGTCTGGCAGAGCAGTTTGAAACAACTGAGTAAGGAAGATTCCTTCATAATCCCGATTAAAGGAAGACTTAAACGCTACGTCAATGTCTTGGCACAGTTAAAGTTTGGAAAGGACTCTTCACATGGTCAAGGAGATAATTGCTGTGATACACAACCTAGGGTTCCATCTGAGCTCCACATGGTCCAAGATGTAGAGGATCTAGGTAATTTTGTGAGACGTAGGCTGCTCCAGCAGTCCAGTAACCTTGCAGCTATAGCTGCCAGCGGTGGTTCACCCCTTCAACTGATCATTACTCCCTTTACACGGAGCAGCGGGGCTTTCCCAGCTGTAGCAAATGAAAAGAAGAAACAATCTCATACACCTGCCCCCCAGCCTTCACCTGCTGATTCTTCATCGAAACAAACTAACAGCACGGAGAATTCTCATGACCAAGCTTCCCACTTCAGTCCTGGAAATTCCACCAATCAAAAAACTTCAGTTGATGGTAGTTCTGGGAATATATGGAAGTATGTTTTCGTGGTTCCAGGTGTGGCACTCTTACTCATTGTTGCTGCAGTCATGCTCTGCATGTGCCGAAGCAGAGGAGTGACAACAATAGGTCCTTGGACGACTGGACTCAGTGGACAGTTGCAGAAAGCATTTGTTACAGGAGTGCCGAAGCTGAATCGAACAGAGCTGGAAACTGCATGCGAGGATTTCAGCAATATTATCAACACTCTGGATGATTGCACTGTGTACAAGGGCACACTGTCAAGTGGAGTAGAGATTGCTGTTGCATCAACTGGAATTTCTTCTTCCAAGGACTGGTCAAAACGCTCAGAAATGGCCTTCCGGAAAAAGATTGATACACTATCACGGGTGAACCACAAGAACTTTGTCAATCTTCTTGGCTACTGTGAGGAGGATGACATTTTCGTAAGAATGATGGTGTTTGAGTATGCTCCAAATGGAAGCCTCTTTGAGCATCTTCACGTTAAGGAAGTGGAACATCTTGATTGGAATGCTAGAACAAGGATAATTATGGGAACTGCTTACTGTCTTCAATACATGCACGAGCTTAATCCGCCTGTAGCACATTCCAATCTGACTTCAGCTGCAATCTATTTGACCGATGATTATGCTGCTAAAATTGCAGAGATCAATATTTGGGCAGACCTTTCATCTAAATCAAAGATCTCAGGCAATGAGGAATCTGAGCATTCTGAATTGCCACCACTTGCTGATCCAGAATCAAATGTCTACTGTTTTGGAATACTGTTGCTGGAAACTATTTCTGGGAAGCTCCCTTACTCTGAAGAACAAGGGCCTCTTGTGAACTGGGCTGCCGAACACTTAAATGACAAAAGAAGCATCAGCTACCTTATTGACCCAACCCTGAAGTCCTTCAAAAACAACGAGCTTGACATCATCTGCGAAGTAATCCAGGATTGCATCCAACCCAATCCAAGGCAGAGGCCGACAATGAGGGAAGTCACTTCAAAACTGAGGGAAGTGATTCCTATTTCACCTGACTCAGCAACACCAAGACTTTCTCCCCTCTGGTGGGCTGAACTTGAGATCCTATCTGTGGAAGCAACCTAA 2175 0.4409 MGGRWNAFGFQFLIFSVLIIFLGIQRCWSLNSEGLALLEFRAGVDSDPYGAFSNWNSSDSDGCMWLGVHCYDSKVQTLDLNGLSLEGILAPGLGKLSHLRSLVLHKNNFSGTIPKEIGGLIRLELLDLRDNNLSGVIPEEIGSMPSLKRLLLCDNKFEGSIPMDAGKLNLLSELQFDENLTSPVASGTGFANRKFGHCVWQSSLKQLSKEDSFIIPIKGRLKRYVNVLAQLKFGKDSSHGQGDNCCDTQPRVPSELHMVQDVEDLGNFVRRRLLQQSSNLAAIAASGGSPLQLIITPFTRSSGAFPAVANEKKKQSHTPAPQPSPADSSSKQTNSTENSHDQASHFSPGNSTNQKTSVDGSSGNIWKYVFVVPGVALLLIVAAVMLCMCRSRGVTTIGPWTTGLSGQLQKAFVTGVPKLNRTELETACEDFSNIINTLDDCTVYKGTLSSGVEIAVASTGISSSKDWSKRSEMAFRKKIDTLSRVNHKNFVNLLGYCEEDDIFVRMMVFEYAPNGSLFEHLHVKEVEHLDWNARTRIIMGTAYCLQYMHELNPPVAHSNLTSAAIYLTDDYAAKIAEINIWADLSSKSKISGNEESEHSELPPLADPESNVYCFGILLLETISGKLPYSEEQGPLVNWAAEHLNDKRSISYLIDPTLKSFKNNELDIICEVIQDCIQPNPRQRPTMREVTSKLREVIPISPDSATPRLSPLWWAELEILSVEAT* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0279 724 Gene3D Phosphorylase Kinase; domain 1 404 511 - -
Vvi10g0279 724 PANTHER PROTEIN MALE DISCOVERER 2 15 722 - -
Vvi10g0279 724 SUPERFAMILY L domain-like 29 184 - -
Vvi10g0279 724 MobiDBLite consensus disorder prediction 315 358 - -
Vvi10g0279 724 Gene3D Ribonuclease Inhibitor 29 212 IPR032675 -
Vvi10g0279 724 Pfam Protein tyrosine and serine/threonine kinase 442 693 IPR001245 GO:0004672|GO:0006468
Vvi10g0279 724 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Vvi10g0279 724 MobiDBLite consensus disorder prediction 308 358 - -
Vvi10g0279 724 FunFam Inactive receptor-like serine/threonine-protein kinase 403 511 - -
Vvi10g0279 724 ProSiteProfiles Protein kinase domain profile. 429 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0279 724 SUPERFAMILY Protein kinase-like (PK-like) 423 693 IPR011009 -
Vvi10g0279 724 Gene3D Transferase(Phosphotransferase) domain 1 512 700 - -
Vvi10g0279 724 Pfam Leucine rich repeat 97 156 IPR001611 GO:0005515
Vvi10g0279 724 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 30 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0279 Vvi-Chr10 2776099 2782882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0279 14 696 Receptor kinase-like Gene Family AT2G42290 27.273 6.87e-50 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vvi10g0279 PK_Tyr_Ser-Thr 1.5e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0279 - - vvi:100251542 1425.99