Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0277 ATGCTCTCCTCCTCTCCATGTCTTTCAGCGAAATGCAACTGTAAAAAAAAATCTACAATATTGGGAAGTGTTTTACATGAAGGAGCAAGAGTAGCCATGACAGAGAGATTATTTATCCATGAAGAAAAAAATGATGGAAGCAAGCAGGAGGAAACAGAAAACACCTCCTTTGACTTGAATGAAGAATCCAACTCCCCAGAGGATGACGCTGCAGCTGAAGCTGAAGTGAGCATGGAGGATGATGAAGGAGAAAGAGAAGGGAGTTCAGCAAATAATAATAATGTCTCTGCTGGGGAAAAACGTCGAGGGAAAAACTCAGTTAGGCAGTATGTTCGATCAAAAATGCCTCGACTCCGGTGGACTCCTGACCTCCATCTCTCTTTTGTGCATGCTGTTGAGAGGCTTGGTGGACAGGCCAGAGCGACTCCAAAGCTGGTTCTTGAGTTGATGAATGTGAAAGGACTTAGCATTGCCCATGTAAAGAGCCACTTGCAGATGTATCGAAGTAAAAGGCTTGATGAATCAGGACAAGTATTATGTAAAACATATAGACGAATGGGAGGAAGAGATCGAGATCGTGATTGCTCTCCTGGAATTTTGTTCAGACCAACCGGTTCTTGCCGACATTTCAGCATGGAGAAGAGTGGAATGGAGCAAGCTTGGAACCCTGGTGAGTGCAGTCGTAGTTACAATCTTTTGCGGTGCACCCTCTCTCAACAACAATATGATTTCAGAGCTAACTCTTCAAGGCGGCAACAGTATGCTTCCAGTCAGTACTATAATGCGTTAAGATTAAGTACTAGTGCACTACAGAGCAAACAATATTTCGGACAAGGCAACGGGTTGGTTGAAAGGATGATTTTCCATACTCAAAACAGGCCATCAACTTCAAACCCGAATCATGTTTTGGAGGCAATTGCACAAAATAGACCCACTAGACCTAGCAGATTTCTTGAAGAAAAGAAGTGGCCTCCACGGGAATTGATTGGAAATCCGTGGAGGGAGAAGACCAGGACTAATGCTGCCTCCCAATCTCTAGTGCATCAAATTTGTACTACTCCAAGGTGTGTTGGAGCAACGCTAACATACAGCAAGAAGCCGTCTGAATGGAGCCCTGCAAATGAGGAAAGACTTGGGCAATTTCAATCACACTTGCATTATCCTAAAACCATCTCCAGTATCTCCACACCACAAATTGAGCCGCCATTTCGGCTTGAGTCGAATCAGGAGAAGAGATTGAAGGAGGAGGAATGGTTGCCTGATTTGCAACTGAGACTGAGCCAAAGAAGTGCAAATGAGGAAGACACCCACCACAAAAGCAAGTATGAAATGAATACCATGCTTTCTTTGTCTCCGTATTCCTCAAGGCAGCAAGAACAACCTACTGAGAAACAAAAAGAAGAAACTCAAACAAATGCCTGGCCTTCACAAACAACCACCGGCAAGGCTGATTTGAGCTTGAGTATTTAG 1470 0.4408 MLSSSPCLSAKCNCKKKSTILGSVLHEGARVAMTERLFIHEEKNDGSKQEETENTSFDLNEESNSPEDDAAAEAEVSMEDDEGEREGSSANNNNVSAGEKRRGKNSVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQARATPKLVLELMNVKGLSIAHVKSHLQMYRSKRLDESGQVLCKTYRRMGGRDRDRDCSPGILFRPTGSCRHFSMEKSGMEQAWNPGECSRSYNLLRCTLSQQQYDFRANSSRRQQYASSQYYNALRLSTSALQSKQYFGQGNGLVERMIFHTQNRPSTSNPNHVLEAIAQNRPTRPSRFLEEKKWPPRELIGNPWREKTRTNAASQSLVHQICTTPRCVGATLTYSKKPSEWSPANEERLGQFQSHLHYPKTISSISTPQIEPPFRLESNQEKRLKEEEWLPDLQLRLSQRSANEEDTHHKSKYEMNTMLSLSPYSSRQQEQPTEKQKEETQTNAWPSQTTTGKADLSLSI* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0277 489 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 112 172 IPR017930 -
Vvi10g0277 489 MobiDBLite consensus disorder prediction 443 459 - -
Vvi10g0277 489 FunFam Myb family transcription factor 114 172 - -
Vvi10g0277 489 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 91 247 IPR046955 GO:0003700
Vvi10g0277 489 MobiDBLite consensus disorder prediction 41 55 - -
Vvi10g0277 489 MobiDBLite consensus disorder prediction 41 109 - -
Vvi10g0277 489 Pfam Myb-like DNA-binding domain 118 168 IPR001005 -
Vvi10g0277 489 SUPERFAMILY Homeodomain-like 114 170 IPR009057 -
Vvi10g0277 489 Gene3D - 115 172 - -
Vvi10g0277 489 NCBIfam myb-like DNA-binding domain, SHAQKYF class 116 170 IPR006447 GO:0003677
Vvi10g0277 489 MobiDBLite consensus disorder prediction 467 489 - -
Vvi10g0277 489 MobiDBLite consensus disorder prediction 429 489 - -
Vvi10g0277 489 MobiDBLite consensus disorder prediction 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0277 Vvi-Chr10 2725731 2732375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0277 105 175 G2-like Transcription Factor Family AT2G42660 83.099 1.03e-34 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vvi10g0277 Myb_DNA-binding 1.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0277 - - vvi:104880489 906.36