Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0273 ATGTTGAATCGAACTGTGAACAATGTAAAAAGCTGCCTTGTTGTCACAATTGATCCGCATAGGGGTTTGATGTGCATATATTGGATGGAGATGGTCCATCGCGATCTAAAGAGCGTTAATTGCCTTGTGGATAAGCACTTGACAATCAAGATTTGCGATTTTGGACTGTCATGGATACTTACCACTACACCAATGAGAGATATATCATCTGCAGGGACTCCAGAATGGATGGCTCAGGAACTCGTAATTTATGCTGTTGCCAATGATGGATTGCGGCTGGAAATTCCTGAATGTCCCTTTGGCAAACTAATTGCAGATTGTTGGGTAGAACCAGACGAAGGACCTAACTGTGATGTGATTCTTTAA 366 0.4208 MLNRTVNNVKSCLVVTIDPHRGLMCIYWMEMVHRDLKSVNCLVDKHLTIKICDFGLSWILTTTPMRDISSAGTPEWMAQELVIYAVANDGLRLEIPECPFGKLIADCWVEPDEGPNCDVIL* 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0273 121 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 22 81 - -
Vvi10g0273 121 Pfam Protein kinase domain 21 82 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0273 121 ProSitePatterns Serine/Threonine protein kinases active-site signature. 31 43 IPR008271 GO:0004672|GO:0006468
Vvi10g0273 121 Gene3D Transferase(Phosphotransferase) domain 1 5 89 - -
Vvi10g0273 121 ProSiteProfiles Protein kinase domain profile. 1 121 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0273 121 SUPERFAMILY Protein kinase-like (PK-like) 9 83 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0273 Vvi-Chr10 2700834 2707316 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0273 18 121 MAP Kinase Kinase Kinase AT2G31010 52.143 3.36e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-1 Vvi10g0273 Pkinase 1.7e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0273 - - csin:114306193 154.451