Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0269 ATGGGTGACCTCACCGATTCTCTCCCCCCCTCCACCGCCCCTCAGCGTTCAGCCCCCTTTCGCGAGGATTGCTGGAGCGAGGACGCCACTTCCACTCTTGTCGACGCCTGGGGCCGCCGTTACATAGAACTCAATCGCGGTAACCTCCGTCAGAAGGACTGGCAGGAGGTGGCTGATGCCGTTAACGCACGTCATGGCCATGTGAAGAAGGCTCGCCGGACGGATGTTCAATGCAAGAACCGTATCGACACCATTAAGAAAAAGTACAAGATCGAGAAAGCTAGGGTTACCACTTCCAATGGAGCCCTAACCAGTTCCTGGCCTTTCTTTTCCCGCTTGGATGCCCTAATCGGACCCACCTTGTCCGCAAAGAAGCCTTCCTCGGCTTCTCCGCCATTAGCCCTTCCTTTGCCCTACTGGAAGACGCCTTCTCCGGCAGCCCCATCGGCGTCCGTTGGGGCTCTGCCGCAGAAACGCCCGATGCCGGCTGTTGATGATTCGTATTTTCGCCGCAACTATTCGGCCGTTGCAGCGGCGGCAGCGGCAGAGGCAGTGGACGAGGACGAGGACGAGGAAGAGGAGGAAGAAGAGTCGAGGTGGAGCGCTGAGCGCAGCGGGGACGTAGATGGGATGAGGCAGTTGGCGCGGGCAATAGAGAGGTTTGGGGAAATATATGAGAAAGTGGAGGCAGAGAAGCAGAAGCAGATGTTTGAATTGGAGAAGCAGCGAATGCAGTTTGCGAAGGATGTGGAGTTTCAGAGGATGAAGATGTTCATGGACACCCAGGTTCAGCTTGAGAAGATCAAGCGAGCCAAGAGGTCGGGTTTGAATGATTCTGAAGCTGTGAACAACTTCAGTCTTCTCTACAATTCTGGAGGCCTTACTCCTTGGTGGCTTCATAAGCTGTGA 909 0.5556 MGDLTDSLPPSTAPQRSAPFREDCWSEDATSTLVDAWGRRYIELNRGNLRQKDWQEVADAVNARHGHVKKARRTDVQCKNRIDTIKKKYKIEKARVTTSNGALTSSWPFFSRLDALIGPTLSAKKPSSASPPLALPLPYWKTPSPAAPSASVGALPQKRPMPAVDDSYFRRNYSAVAAAAAAEAVDEDEDEEEEEEESRWSAERSGDVDGMRQLARAIERFGEIYEKVEAEKQKQMFELEKQRMQFAKDVEFQRMKMFMDTQVQLEKIKRAKRSGLNDSEAVNNFSLLYNSGGLTPWWLHKL* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0269 302 MobiDBLite consensus disorder prediction 1 21 - -
Vvi10g0269 302 Gene3D - 25 91 - -
Vvi10g0269 302 Coils Coil 178 198 - -
Vvi10g0269 302 Coils Coil 211 245 - -
Vvi10g0269 302 MobiDBLite consensus disorder prediction 180 206 - -
Vvi10g0269 302 FunFam trihelix transcription factor ASIL2 25 91 - -
Vvi10g0269 302 Pfam Myb/SANT-like DNA-binding domain 22 116 IPR044822 -
Vvi10g0269 302 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 14 272 IPR044823 -
Vvi10g0269 302 MobiDBLite consensus disorder prediction 183 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0269 Vvi-Chr10 2636699 2638919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0269 21 270 Trihelix Transcription Factor Family AT3G14180 32.738 3.96e-43 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vvi10g0269 Myb_DNA-bind_4 3.1e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0269 - - vri:117923811 543.502