Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0256 ATGGATTCGAGCTCCTGGAACTCACGCTCTTCACATGGGTCCGATTTTTTTCAAGTGTACGACCCGTTTTCGCAGAATAAAGGAGGGTATGGTGGGGTTTTGCGGGGTGGGTCTTTAGTGTTGGATTCTGAGAAAAGAGAGCTCGTGAAAGCTCCGGTGAGAGCGGTGAAAAAGGGGGTGTCGGAGGCGAAGGCTATGGCGGCCTTGAAGAATCATAGCGAGGCGGAGAGGAGAAGAAGAGAGAGAATCAATGGTCATCTCTCCACGCTTCGCGGCTTCGTGCCATGCACTGAAAAGATGGACAAAGCTACATTGCTTGCCGAAGTTATCCAGCAAGTGAAAGAACTGAAGAAGAATGCTGCAGAAGCCAGTAAAGGTTTACTGCTTCCAATGGAAGTTGATGAAGTAAGAGTAGAACCACATGATGATGGAACAGGAGATGGAACTTCTTATTTCATGGCATCTGTCTGTTGCGATTACAGCCCTCGGCTTCTCTCTGATATAAGACAAGCCCTTGATACCCTCAATATAACTACAGTGAAGGCAGAAATCTCCAGTTTGGGAGGGCGGATGAAAAGCATGTTTATTTTCACAAGCTGCAAAAAACACAAGAGCAATGATTCTGAGGCACACCGGCTTCTTGCAAGTTCTGTCCATCAGGCCCTCAGTTCTGTCCTAGACAAAGTTTCTGTGACAGCAGAATTCTCGCCCAGAACACCACATCCAAACAAGAGGCGAAGGGTTTCCTTTTTTGATTCTTTGAGCTCGTCTTCCTGA 777 0.4723 MDSSSWNSRSSHGSDFFQVYDPFSQNKGGYGGVLRGGSLVLDSEKRELVKAPVRAVKKGVSEAKAMAALKNHSEAERRRRERINGHLSTLRGFVPCTEKMDKATLLAEVIQQVKELKKNAAEASKGLLLPMEVDEVRVEPHDDGTGDGTSYFMASVCCDYSPRLLSDIRQALDTLNITTVKAEISSLGGRMKSMFIFTSCKKHKSNDSEAHRLLASSVHQALSSVLDKVSVTAEFSPRTPHPNKRRRVSFFDSLSSSS* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0256 258 Pfam Helix-loop-helix DNA-binding domain 71 116 IPR011598 GO:0046983
Vvi10g0256 258 SMART finulus 73 122 IPR011598 GO:0046983
Vvi10g0256 258 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 67 116 IPR011598 GO:0046983
Vvi10g0256 258 PANTHER TRANSCRIPTION FACTOR BHLH30 38 253 IPR045847 GO:0003700|GO:0006355
Vvi10g0256 258 Coils Coil 106 126 - -
Vvi10g0256 258 Gene3D - 62 125 IPR036638 GO:0046983
Vvi10g0256 258 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 123 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0256 Vvi-Chr10 2530731 2534167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0256 59 229 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 41.954 1.58e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi10g0256 HLH 3.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0256 - - vvi:100256680 473.396