Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0253 ATGTCATCGGAGTGCCTCTTAAGGCATTTCTCAACGTATGGGGAGATCGAGGAGGGTCCTTTTAGGTTCGATAAGCATACAGGAAAATCAAAGGGGTTCGCCTTTTTTGGTTACAAGACAGAGGAAAGGGCAAAAGCAGCAGTTTTGCATCCAAGAAAAAACATTGATGGGCATCAGATCGTCTGCAAGTATGCAGGCGAAGGGAAAAAAGGAAATCATGGGGCAGCACCAAATGTTGGGGTCGGTGGAATTCAGACCTCAATTGGGTTCCCTGGAAATGATGCTCTCCAGCCGGTTGAAGGGGGAGTGGCGGTTTTACCGCACCACCAGCACCCTTTCTCCATTGGTGGTCCGGCGTTGACACCAATTGGGAGTCGGGCGCCCCCATCACTAGGTAGTGGTGGTGCATATGTTGGTGGAACGGGAGGAGCTTATGGTGTGGGATCTCAGTACGGTGGCCCGAGATCTGGTGAGTCTTCACAGCATAGCTTGTCTTTTGCGAGCACTGCAATGGTTTTTCACCCGTTCCTTTCAAACATTGCAATTCCCTTTTTACCTATCTCCCCTGACCCCACCCCCACCATTGGTTGTGCCCATGAAATATTGTTTTATTTCTCGGGCCTCATGGCGGCTTCTATTATGATGTAG 648 0.5 MSSECLLRHFSTYGEIEEGPFRFDKHTGKSKGFAFFGYKTEERAKAAVLHPRKNIDGHQIVCKYAGEGKKGNHGAAPNVGVGGIQTSIGFPGNDALQPVEGGVAVLPHHQHPFSIGGPALTPIGSRAPPSLGSGGAYVGGTGGAYGVGSQYGGPRSGESSQHSLSFASTAMVFHPFLSNIAIPFLPISPDPTPTIGCAHEILFYFSGLMAASIMM* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0253 215 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 70 IPR000504 GO:0003723
Vvi10g0253 215 SUPERFAMILY RNA-binding domain, RBD 2 77 IPR035979 GO:0003676
Vvi10g0253 215 Gene3D - 1 87 IPR012677 -
Vvi10g0253 215 PANTHER GEO13361P1-RELATED 4 157 - -
Vvi10g0253 215 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 60 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0253 Vvi-Chr10 2504243 2505225 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0253 2 116 C2H2 Transcription Factor Family AT2G19380 30.328 2.79e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0253 K12741 - vri:117923330 146.747