Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0232 ATGGAAGTTTGCGCTTCGGAGACCGCTCTCGTCTTCCCTTCTCGCCCACCCTTCGAACACGACCACGTTCTCCCCCTCTCCCATCTCGACACCGACCGCAATCTCCACGTCAGCTTCCGCTACGTCCGGGCCTACACCAGCACAGCCGCGAGCAACCACCCCTCCGACCCCTTCCGCGTCATTTCTGCCGCACTCTCCGACGCACTCGTTTATTACTACCCTTTCACCGGCTCTCTTCGGCGCCGAAGCGACGACCGTCTCGAGCTGTTTTGCGCCGCAGGGAAAGCAGTCCCCTTTGTTCGCGCCGCGGCGGACTGCTCGCTTGAGTCGGTGAACTACCTGGACGAGCCGGATCGGCATTTCGTCGAACAGTTGGTGCCTGACCCCAGACCGGAGGAGGGCTTGGTGACGCCGTTCGTGTTACAGTTGACGGTGTTCGCGTGCGGTGGGTACTGTCTCGGGGCTTCGATTCACCATGCGATGTGCGACGGACTTGGTGCAACTCAGTTTTTCAACGCCGTGGCTGAGTTGGCTCGGGGGGCGAGTCGGATATCTGTTGAGCCGGTTTGGGAGCGTGGGAGTTTCCTAGGTCCAAGAGAGCCGCCGCGGGTGGAGGTGCCGTTTGAGGAGGTTTTGTGTTTTGAGAAGGGGTCTTCACCGTACGGTAAGTCCAGTGAAGCAGTTGCTAGGGAGTGTTTTCATGTGAGGGATGGGTGTTTAGACCGCTACAAGGCTCTGCTGTTGGAAAAATCAGGGGTGAGCTTTACTACGTTTGAAGCTTTGGGTGCATTCCTATGGAGAGCCAGGGTTAAAGCCTCTGGAGTTCCCTGCCATGAGAAAGTGAAGTTTGCATATTCAATCAACATAAGAAAGCTAGTGAAACCGCCACTACCACTCGGCTACTGGGGCAATGGCTGTGTCCCCATGTACGTGCAGCTTAGCGCCAAAGAGCTGATAGAAAACCCCATCTGGGAAACGGCCAAGCTGATCAAGAAAAGCAAAAGCAATGCCACGGATGAGTATGCCCGCTCATTCATAGACTTCCAAGAGCTAAATTATGAAAAGGGGATCACAGCAGGGAAGGGAGTGAGTGGATTCACTGACTGGAGGCATTTAGGCCATTCCACAGTGGACTTTGGGTGGGGAGGTCCTGTAACTGTTTTGCCACTCTCCAGACACCTTCTTGGGAGCGTGGAACCTTGCTTCTTCTTGCCTTATTCTTCAGCCAAGGCTGGAAACAAGGATGGGTTCAAGGTTTTAATAACTTTGCCAGAGAATGCCCTGCATGCTTTCAGGCAAGAGATGGAGAAATTTACCAATGAACAATTTGGATTGCCTTGA 1341 0.5436 MEVCASETALVFPSRPPFEHDHVLPLSHLDTDRNLHVSFRYVRAYTSTAASNHPSDPFRVISAALSDALVYYYPFTGSLRRRSDDRLELFCAAGKAVPFVRAAADCSLESVNYLDEPDRHFVEQLVPDPRPEEGLVTPFVLQLTVFACGGYCLGASIHHAMCDGLGATQFFNAVAELARGASRISVEPVWERGSFLGPREPPRVEVPFEEVLCFEKGSSPYGKSSEAVARECFHVRDGCLDRYKALLLEKSGVSFTTFEALGAFLWRARVKASGVPCHEKVKFAYSINIRKLVKPPLPLGYWGNGCVPMYVQLSAKELIENPIWETAKLIKKSKSNATDEYARSFIDFQELNYEKGITAGKGVSGFTDWRHLGHSTVDFGWGGPVTVLPLSRHLLGSVEPCFFLPYSSAKAGNKDGFKVLITLPENALHAFRQEMEKFTNEQFGLP* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0232 446 PANTHER ACYL TRANSFERASE 4 3 439 - -
Vvi10g0232 446 Gene3D - 218 435 IPR023213 -
Vvi10g0232 446 Gene3D - 1 211 IPR023213 -
Vvi10g0232 446 Pfam Transferase family 2 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0232 Vvi-Chr10 2133478 2135442 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0232 45 389 Monolignol Biosynthesis Gene Families AT5G48930 30.532 8.30e-38 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0232 - - vvi:100246928 900.197