Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0229 ATGTTGCATGAGAAAACAAAAGATATATGGAAAAGCAAACGCTCTTACTTGATGTCTTCTTCTGCATCATTAGTATCTGAGCAACTGATGATCGAAGGCACAAGAATCAGTTTGGAGCACGCATCATCGGAGCTGAGGCTGAAGAAGGGAGCAGAAAGAGTGCAAGTCCGACGAGGTCACATTGCGCGTTCCATCGGAAAGAAAGATCGTCACAGCAAGGTTTGTACTTCAAAGGGTCCAAGAGACCGCCGGGTGCGATTGTCTGCTAACACTGCTATTCAATTCTACGATGTCCAGGACCGACTCGGCTACGACAGACCCAGTAAGGCGGTTGATTGGCTCATGGAGAAGGCGAAAACGGCCATTGATGCTCTTGCTGAGTTGCCTACACAATGTCCTTTATCTACTTCTGTTGTTGCATCAGCCCAACAGAGAGAGCAGAATCTAAATCATCTACAGCATCCCCACTTACGCGTTGAGCAGTTGGAAACTATCTTGGATTTGAATCAGCAGCATTTGAATGAGAATCCCATTTACAGTTCGGGCTTCTTTCACATTCCTGTTTCCACAGCATTTTCTGCAGTTCATTTCCAGAACAGCCCAGCTTATCCGAATTTAGGAGCAATAAGCCACACCCAATATCCTTACCTGTCTATTCAGAGCTTCCAAGACCCAACACCTGGACGTCATCATTCTACTACTATTTCTTCAGCGGATCAAGCTATCTACTCTGCCTCGTCTCCACTAGTTTTTGATGCCGCATCTACCCACTGGCCTCATAGTGATCCACCTGAGATGAGTCAGCCCCAGAAAATGATTGATTGGAATTCTGACACAGGCAATGGAATTCAAGGGCTTGTCTTTGATTCGTTGCCACTTCCACTACAAGAACCAGTTCTTAGCCAAAACCAGTTGTTTTCCGAGAGGGAACCCCTTCAGTCCACTGATTCAGCTTTAATTTCCGATTGGATGAATCCACCTATTTCCACCGCCAATGTTCAACATATCACAATGGAAGCCAATCAATCATCTGGCTTTGCATTGGCCTCAAACGGAATTTCGAGGATTGGCATTTCTGCACATATTCAAGGTGAAGATATGGAGCAGAGCACGGTGTGCAACAGCCAGTCCTCTGCTACTCACTGCTGA 1149 0.4604 MLHEKTKDIWKSKRSYLMSSSASLVSEQLMIEGTRISLEHASSELRLKKGAERVQVRRGHIARSIGKKDRHSKVCTSKGPRDRRVRLSANTAIQFYDVQDRLGYDRPSKAVDWLMEKAKTAIDALAELPTQCPLSTSVVASAQQREQNLNHLQHPHLRVEQLETILDLNQQHLNENPIYSSGFFHIPVSTAFSAVHFQNSPAYPNLGAISHTQYPYLSIQSFQDPTPGRHHSTTISSADQAIYSASSPLVFDAASTHWPHSDPPEMSQPQKMIDWNSDTGNGIQGLVFDSLPLPLQEPVLSQNQLFSEREPLQSTDSALISDWMNPPISTANVQHITMEANQSSGFALASNGISRIGISAHIQGEDMEQSTVCNSQSSATHC* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0229 382 ProSiteProfiles TCP domain profile. 67 125 IPR017887 -
Vvi10g0229 382 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 48 313 IPR005333 GO:0003700
Vvi10g0229 382 Pfam TCP family transcription factor 66 154 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0229 Vvi-Chr10 2112286 2113434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0229 51 368 TCP Transcription Factor Family AT1G53230 36.769 2.39e-52 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vvi10g0229 TCP 1.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0229 - - vvi:104880485 691.419