Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0227 ATGAGTTTGCTTGAAGGAGAAGAGCTCGGCGAAAACCAAAAATTACTGATTGCAGGGGTAATCTCTTTATTCTTCATCGTCGTACTAGTCATCCTTCTCCATATCTATGCTAGACATCTGCTTAGACGACAGGACAGATCAAGACTCCAAGCTTCACTAAATTCATCGAGGACTGAAGTTGAAGCAGTTGGAATGAATGATTCGATTGAGACATCGAAGAGAGGGCTCGACCCATCTGTCATAGCCTCACTGCCTATGTTCCTCTACCAACCAACCGATGGGCTCGACGGCGGTGACTGTGTAGAGTGCTCGGTGTGCTTGAGCACCATAGAGGAAGGGGCTAAGGTCAGGCCTCTGCCAAACTGTAAGCACGAGTTCCATGCGGAGTGCATTGACATGTGGCTGAGCTCACACATTACTTGCCCCATTTGTCGCACCGGGGCTGAGCCTCAGCTCAGGGTCGAGCCCATGGTCCCACCAGCGCCACCAACAGCACCACCACTGGAGGAGAGTACCTCGGATGGAGGTGCACAGTTGCAGAAAGTGGGTGGGTCGGGATCCCGATTAAGTTCGTTTAGGAGGATACTGGGTAGGGAGAGATCATCGACAAGGATTCAAAACTGTGGAGATGAAGAAGCTGGTGCGGAAAATCTGTAA 657 0.5084 MSLLEGEELGENQKLLIAGVISLFFIVVLVILLHIYARHLLRRQDRSRLQASLNSSRTEVEAVGMNDSIETSKRGLDPSVIASLPMFLYQPTDGLDGGDCVECSVCLSTIEEGAKVRPLPNCKHEFHAECIDMWLSSHITCPICRTGAEPQLRVEPMVPPAPPTAPPLEESTSDGGAQLQKVGGSGSRLSSFRRILGRERSSTRIQNCGDEEAGAENL* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0227 218 MobiDBLite consensus disorder prediction 156 218 - -
Vvi10g0227 218 Pfam Ring finger domain 102 145 IPR001841 -
Vvi10g0227 218 CDD RING-H2_EL5-like 102 145 - -
Vvi10g0227 218 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Vvi10g0227 218 FunFam E3 ubiquitin-protein ligase ATL6 65 151 - -
Vvi10g0227 218 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 17 153 - -
Vvi10g0227 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 150 IPR013083 -
Vvi10g0227 218 SUPERFAMILY RING/U-box 80 152 - -
Vvi10g0227 218 MobiDBLite consensus disorder prediction 171 187 - -
Vvi10g0227 218 SMART ring_2 103 144 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0227 Vvi-Chr10 2101039 2101695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0227 12 216 C3H Transcription Factor Family AT2G42360 42.130 2.50e-47 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0227 K19038 - vvi:100253763 402.134