Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi10g0227 | ATGAGTTTGCTTGAAGGAGAAGAGCTCGGCGAAAACCAAAAATTACTGATTGCAGGGGTAATCTCTTTATTCTTCATCGTCGTACTAGTCATCCTTCTCCATATCTATGCTAGACATCTGCTTAGACGACAGGACAGATCAAGACTCCAAGCTTCACTAAATTCATCGAGGACTGAAGTTGAAGCAGTTGGAATGAATGATTCGATTGAGACATCGAAGAGAGGGCTCGACCCATCTGTCATAGCCTCACTGCCTATGTTCCTCTACCAACCAACCGATGGGCTCGACGGCGGTGACTGTGTAGAGTGCTCGGTGTGCTTGAGCACCATAGAGGAAGGGGCTAAGGTCAGGCCTCTGCCAAACTGTAAGCACGAGTTCCATGCGGAGTGCATTGACATGTGGCTGAGCTCACACATTACTTGCCCCATTTGTCGCACCGGGGCTGAGCCTCAGCTCAGGGTCGAGCCCATGGTCCCACCAGCGCCACCAACAGCACCACCACTGGAGGAGAGTACCTCGGATGGAGGTGCACAGTTGCAGAAAGTGGGTGGGTCGGGATCCCGATTAAGTTCGTTTAGGAGGATACTGGGTAGGGAGAGATCATCGACAAGGATTCAAAACTGTGGAGATGAAGAAGCTGGTGCGGAAAATCTGTAA | 657 | 0.5084 | MSLLEGEELGENQKLLIAGVISLFFIVVLVILLHIYARHLLRRQDRSRLQASLNSSRTEVEAVGMNDSIETSKRGLDPSVIASLPMFLYQPTDGLDGGDCVECSVCLSTIEEGAKVRPLPNCKHEFHAECIDMWLSSHITCPICRTGAEPQLRVEPMVPPAPPTAPPLEESTSDGGAQLQKVGGSGSRLSSFRRILGRERSSTRIQNCGDEEAGAENL* | 219 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi10g0227 | 218 | MobiDBLite | consensus disorder prediction | 156 | 218 | - | - | |
Vvi10g0227 | 218 | Pfam | Ring finger domain | 102 | 145 | IPR001841 | - | |
Vvi10g0227 | 218 | CDD | RING-H2_EL5-like | 102 | 145 | - | - | |
Vvi10g0227 | 218 | ProSiteProfiles | Zinc finger RING-type profile. | 103 | 145 | IPR001841 | - | |
Vvi10g0227 | 218 | FunFam | E3 ubiquitin-protein ligase ATL6 | 65 | 151 | - | - | |
Vvi10g0227 | 218 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 17 | 153 | - | - | |
Vvi10g0227 | 218 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 63 | 150 | IPR013083 | - | |
Vvi10g0227 | 218 | SUPERFAMILY | RING/U-box | 80 | 152 | - | - | |
Vvi10g0227 | 218 | MobiDBLite | consensus disorder prediction | 171 | 187 | - | - | |
Vvi10g0227 | 218 | SMART | ring_2 | 103 | 144 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi10g0227 | Vvi-Chr10 | 2101039 | 2101695 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi10g0227 | 12 | 216 | C3H Transcription Factor Family | AT2G42360 | 42.130 | 2.50e-47 | 154 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi10g0227 | K19038 | - | vvi:100253763 | 402.134 |