Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0222 ATGAATGTCCCATCCAATTCCGTTAACACAGCTCCAAAATCTCGTTTCCCCTGCTCTCTATTCATCGTCTTCCTTCTGATTCTCTCCCATGCATACATCATCGCAGCTGACTACAAACCCACAAATATTGGAGCAATCGTGGATGCTAGTTCCCGTAAAGGCAAAGAAGAAAAAACAGCCATGGAAATAGCAATTAGTAGGTTCAATAGGGATTCGAAGAATCTCCAGCTGTTTCTCCATTTCGGTAACTCCACCGGAGAACCCATTCAGGCAGCTTTCACTGCTCAAGAGCTGATTAAAGAGAAGGAAGTGGGGGTGATTGTGGGCACGGATACATGGCAGGAAGCAGCTTTAGTTGCTGATGTTGGAAACCGAGCTCAAGTGCCTGTTCTTTCATTAGCAGCATCAACCATTACCCCACCATTAAGGCAGATTAGGTGGCCTTTCTTGACACAAATGGGTAGCAATGTTTCTGAACAAATCAGATGTATTTCAGCTATTGTTGGCTCCTACCATTGGCAAAGGGTCATCGTAGTCTATGAAGATGATGCACATGGTGGTGATTCTGGGATGCTAGCTCCTTTATCTGAGGCTCTTCAATACTTCAGTACAGAGATCGAGTATACCGTGGTTCTTCCACCAATATCATCTTTATCTGACCCAAAAGAAGCCATCAATGAAGAGCTGATGAAGCTTCTCAGTATACAATCAAGAGTTTTCATTGTTCTCAAATCATCTCCATTGATGGCTACCCATTTGTTCCAAGAAGCAAGGCGAATGGGATTTATGGCGAGAGAGTCAGCCTGGATAATTACAGATACCATTTCGAGCTTCTTGGACTCCATTGACACTTCTGCTATCTCCTATATAGAAGGGGCTCTAGGAATTAAAACCTACTATTCCAAAACCAGTAGGCCCTTCCTAGAATTCTCTGCTCAGTTCCAGAAAATGTTTGAAAATGAATACCCAGAAGAAGACAACACCAAGCCGGGAATTCATGCATTACGAGCATACGATAGCATTTCTGTCATCGCAAATGCCCTGGTGAGATTAGCTAGTGATACTATTACTCCAAAAAGGCTGTTAGAAACTATATTATCAAGCAATTTCAATGGTTTAAGTGGCAAAATTAGTTTCCAAGGGGGTGATCAATTGGATTCAAATTCGTTGCCATTGAGGATTATAAACCTTGTTGGAAAGGGCTACAAGGAGCTTGACTTTTGGACGCAGGACTTGGACCACCCTTTTAGCAGAGAAGGTGGAGAGGCAAATAGTAGTAGAAGAACTACAAAGGTTTTGGATGGTCCAGTGATTTGGCCAGGGTACCTGAAACGTGTTCCCAAGGGATGGGAGATGCCCACTGATGAAAAACGATTGAAGATAGGAATTCCAGCTAACACCTCTTTTGATAAGTTTGTGAAGGTGGACGAAGCTCAAATTGATCCTGAGAAAAAATATACTGGTTTCTGTATTGATATTTTCCGAGAGGTGATAAAAATTCTGGAGCAAAATTACTCTCTACCCTATGACTTCCATCCATATGATGGCACATATGACGAGCTGGTTGATCGTGTTTATACCAAGACTTATGATGCTGTCGTTGGCGATATGACAATATTAGCAAACCGTTCAAGAATAGTGGAATTTACTCAGCCATTTGCTGAGTCAGGGTTGTCCATGATAACTCCAGTTAAATCTAGAGAAGCCTACAAGGCATGGCTGTTCATGAAGCCCTTCACCATGGAAATGTGGGTGGTGACTGGCGTTATCTTGATCTACACAATGTTTATAGTTTGGATATTGGAGCACCAAAACAATCCAGAATTTCAAGGCTCGTGGAAGGATCAGCTTGGCACTACACTTTGGTTCACCTTCTCTTCTCTTTTCTTTGCTCACAAGGAAAAAATTAATAGCAACATTACTCGAGTGGTGGTAGTGGTGTGGCTAATGGTTGTTTTCGTTTTAACCTCAAGCTACACTGCTAGTCTCTCTTCAATGCTGACAGTCCAACGACTCGAACCCAATGTGACAGACATCGAGTGGCTTAAGGTTCACAAGTTAAACGTTGGTTGTGATGGTGATTCATTTGTGAGAAAGTACTTGGAGGATGTTCTTGATTTTAAAAAAGACAACATCAAGAATATTAGCAGCCAATATGCCTATCCTAACGAATTCCAGAAAGGCACTATCTCAGCAGCCTTTCTTGAACTCCCTTATGAAAAGGTTTTCATGAATCGGTACTGCAAGAAGTACACTGCCTCCAATCCCCTCAGCAGATTTGGAGGATTAGGCTTTGTATTTCAAAAAGGTTCTCCAATAGCTGCAGATGTCTCTAAAGCCATCCTAACCCTTTCAGAGAGAGGGATTCTACAATCATTAGAAGACAAGTGGTTCCCTAGCTCCGACGAGTGTTCCACTACTGACACTACTGAATTGAGCCTCCAGAACTTCTGGGCTCTTTATGTTCTATGTGGCGCCACTTCCACCATTTGTTTTCTGCTCTTCCTTTGTCGTCTCCTACTAAAATATTTTCAGCAAAATGCGCCAAGTGAAAGTGCCTGGAGAAGAACTGTTGAACTAGCAAATTACATCCACAAGGTAGAAATTAAGATTCCAGACAGAGCTTCAGATTTTTCTCAAGGGTCCAATAGGGCCTCTTCAAGTGGTTCTCCCGGGTGGGTATTAGTGAGCCCTTCTGATGCTCCTGAACCATCAGAGGCCTCTCCTCCAACTGCTATTCAAATGATATGA 2751 0.426 MNVPSNSVNTAPKSRFPCSLFIVFLLILSHAYIIAADYKPTNIGAIVDASSRKGKEEKTAMEIAISRFNRDSKNLQLFLHFGNSTGEPIQAAFTAQELIKEKEVGVIVGTDTWQEAALVADVGNRAQVPVLSLAASTITPPLRQIRWPFLTQMGSNVSEQIRCISAIVGSYHWQRVIVVYEDDAHGGDSGMLAPLSEALQYFSTEIEYTVVLPPISSLSDPKEAINEELMKLLSIQSRVFIVLKSSPLMATHLFQEARRMGFMARESAWIITDTISSFLDSIDTSAISYIEGALGIKTYYSKTSRPFLEFSAQFQKMFENEYPEEDNTKPGIHALRAYDSISVIANALVRLASDTITPKRLLETILSSNFNGLSGKISFQGGDQLDSNSLPLRIINLVGKGYKELDFWTQDLDHPFSREGGEANSSRRTTKVLDGPVIWPGYLKRVPKGWEMPTDEKRLKIGIPANTSFDKFVKVDEAQIDPEKKYTGFCIDIFREVIKILEQNYSLPYDFHPYDGTYDELVDRVYTKTYDAVVGDMTILANRSRIVEFTQPFAESGLSMITPVKSREAYKAWLFMKPFTMEMWVVTGVILIYTMFIVWILEHQNNPEFQGSWKDQLGTTLWFTFSSLFFAHKEKINSNITRVVVVVWLMVVFVLTSSYTASLSSMLTVQRLEPNVTDIEWLKVHKLNVGCDGDSFVRKYLEDVLDFKKDNIKNISSQYAYPNEFQKGTISAAFLELPYEKVFMNRYCKKYTASNPLSRFGGLGFVFQKGSPIAADVSKAILTLSERGILQSLEDKWFPSSDECSTTDTTELSLQNFWALYVLCGATSTICFLLFLCRLLLKYFQQNAPSESAWRRTVELANYIHKVEIKIPDRASDFSQGSNRASSSGSPGWVLVSPSDAPEPSEASPPTAIQMI* 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0222 916 Gene3D - 574 716 - -
Vvi10g0222 916 SUPERFAMILY Periplasmic binding protein-like I 42 450 IPR028082 -
Vvi10g0222 916 Pfam Receptor family ligand binding region 57 396 IPR001828 -
Vvi10g0222 916 Pfam Bacterial extracellular solute-binding proteins, family 3 481 799 IPR001638 -
Vvi10g0222 916 PIRSF IGluLR_plant 13 890 IPR017103 -
Vvi10g0222 916 CDD GluR_Plant 457 798 - -
Vvi10g0222 916 SMART GluR_14 458 800 IPR001320 GO:0015276|GO:0016020
Vvi10g0222 916 Gene3D - 723 805 - -
Vvi10g0222 916 FunFam Glutamate receptor 458 572 - -
Vvi10g0222 916 Gene3D - 160 328 - -
Vvi10g0222 916 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 42 855 IPR015683 -
Vvi10g0222 916 FunFam Glutamate receptor 572 710 - -
Vvi10g0222 916 FunFam Glutamate receptor 160 328 - -
Vvi10g0222 916 FunFam Glutamate receptor 710 804 - -
Vvi10g0222 916 SUPERFAMILY Periplasmic binding protein-like II 437 800 - -
Vvi10g0222 916 Gene3D - 36 159 - -
Vvi10g0222 916 MobiDBLite consensus disorder prediction 877 894 - -
Vvi10g0222 916 Gene3D - 458 573 - -
Vvi10g0222 916 MobiDBLite consensus disorder prediction 877 916 - -
Vvi10g0222 916 Gene3D - 333 457 - -
Vvi10g0222 916 CDD PBP1_GABAb_receptor_plant 42 418 IPR044440 -
Vvi10g0222 916 Pfam Ligand-gated ion channel 800 826 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0222 Vvi-Chr10 2036978 2040965 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0222 43 843 Ion Channels AT2G29120 35.190 1.35e-153 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0222 - - vvi:100260637 1787.31