Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0221 ATGAAGCCTTTCACAAGGGAAATGTGGGTAGTCACTGGTGCCCTCTTGGTCTACACCATGTTCATAGTTTGGGTAGTAGAGTACCAATCCAACAATCCGGCATTCAGAGGCCCATGGAAGAGTCAGCTTGGGACAGCTCTTTGGTTCACCTTCTCTTCTCTTTTCTTTGCTCATAGGGAGACAATTCGTAGCAATATTACTCGAGTAGTGATAGTGGTGTGGCTATTTGTTGTCTTCGTCTTAACCTCCAGCTACACTGCTAGTCTTTCTTCAATGCTCACTGTCCAACGGATTGTACCCGATGTGATGGATGTCGAATGGCTAAAAGCTACCAAATCTGTGGTTGGTTGTGATGGTGATTCATTTGTGAGGAAATACTTGGAGAATGTGATTAAATTCGAAGGGCCTGATATCAAGAATATTAGCAACCAATACCAATATCCTGGCGAATTCCAGAGTGGGAACATCTCAGCTGCCTTTCTTGAACTTCCTTATGCAAAAGTTTTCATCAATCAGTTCTGCAAGAATTACACCGCCTCCGAAACCCTCAACAGATTCGGAGGATTAGGCTTTGCCTTTCAGAAAGGCTCTCCACTAGCTGCTGATGTCTCTGAAGCCATCCTAACCATATCTGAGGAGGGGATTCTAAAAGCATTAGAAGATGAGTGGTTTCCTCGTTCTGCCGAGTGTTCCACCACCGAAACTGATGAACTGAGCCTCCGGAGCTTCTGGGCTCTCTACCTTTTATGTGGCGCCACTTCCACCCTCTGCTTTCTACTGTTCTTCCTTCGCCTGCTCATCGATTTTAAACGCCACCAGGCATCCAGAAGTAATGCAAACCCAAATGATGAAAGTGTCTGGATGAAGACCGTTCAATTAGTACATTTCTTTCATAGTGGACAAACTGAGATTCCTAATGAAAGACCGTCAAATTTGTCTCCCCGTCTCACTGGAGATGAATGGAGCACCCCAAGGTGGTCAACAGTGAGTCCTTCTGAAGCCCCAGAGCCTCCTGAGGCCCCGGAGTCCCCTGAGGCCTCTCCACCAACTGCAACTATGAACTCAAGGGTGAGCCCTTCTGATGAGCATGAGCCTCCTGAGACCCCTCCCCCAACTGCAACCATGTAG 1128 0.4716 MKPFTREMWVVTGALLVYTMFIVWVVEYQSNNPAFRGPWKSQLGTALWFTFSSLFFAHRETIRSNITRVVIVVWLFVVFVLTSSYTASLSSMLTVQRIVPDVMDVEWLKATKSVVGCDGDSFVRKYLENVIKFEGPDIKNISNQYQYPGEFQSGNISAAFLELPYAKVFINQFCKNYTASETLNRFGGLGFAFQKGSPLAADVSEAILTISEEGILKALEDEWFPRSAECSTTETDELSLRSFWALYLLCGATSTLCFLLFFLRLLIDFKRHQASRSNANPNDESVWMKTVQLVHFFHSGQTEIPNERPSNLSPRLTGDEWSTPRWSTVSPSEAPEPPEAPESPEASPPTATMNSRVSPSDEHEPPETPPPTATM* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0221 375 Gene3D - 1 133 - -
Vvi10g0221 375 Pfam Ligand-gated ion channel 6 252 IPR001320 GO:0015276|GO:0016020
Vvi10g0221 375 SMART GluR_14 20 226 IPR001320 GO:0015276|GO:0016020
Vvi10g0221 375 FunFam Glutamate receptor 136 230 - -
Vvi10g0221 375 FunFam Glutamate receptor 1 136 - -
Vvi10g0221 375 MobiDBLite consensus disorder prediction 299 330 - -
Vvi10g0221 375 SUPERFAMILY Periplasmic binding protein-like II 80 230 - -
Vvi10g0221 375 Gene3D - 190 224 - -
Vvi10g0221 375 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 282 IPR015683 -
Vvi10g0221 375 Gene3D - 158 189 - -
Vvi10g0221 375 MobiDBLite consensus disorder prediction 299 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0221 Vvi-Chr10 2017876 2019378 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0221 1 297 Ion Channels AT1G42540 34.853 2.99e-59 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0221 - - vri:117904323 585.874