Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0220 ATGACGGCCATGAAGATAGCCGTGGACAAGTTCAATAATAATTCCAAGAATCATAAGCACTCTATTATCTCCCGGGACTTCACCGGCGAACTCAACCGGGCGGCTTTAATAGCTGAAGAACTGATTAAAGAGAAGAAAGTGCAAGTGATTGTGGGCATGGATACATGGCAGCAAGCAGCTTTAGCTGCTGAAATCGGAAACCAAGCTCAAGTACCAGTTCTTTCATTGGCTGCATCTGCGAGTGTCCGGCCGTCGAGGCAGCTTGGAAGGCCCACCCTGGTACAAATGGGCACCAATGTTTCTGAACAAATAAGGTGCATTTCAGCTATCGTTTACTCCTATCACTGGCGAAGTGTCATCACAATCTATGAAGATGATGCGTACGGTGGCAACGCTGAGTTGTTAACTATTTTATCTGAAGCTCTTCAAGGAGTTGGATCGGAGATCGAGTACCATTTGTCTCTTCCTCCCATATCATCTCTATCTGATCCAAGAGGAGCTGTCCATCAAGAGCTCTTGAAGCTTCTGAGCACACAATCCAGGGTTTTCATTGTTCTTCAATCATCATTACCGATGGCTATCCATTTGTTCCAAGAAGCAAGGCGGATGGATTTTATGGGGAAAGACTCAGCCTGGATAGTTACAGATAGCATTTCAAGCTTCCTGGATTCCATGGACACCTCTGTTATCCCCTATATGGAAGGGGCTCTAGGAATCAAGTCCTGCTATTCCAAATCCAATAGGCCCTTCCAAGAATTCTCTGCCCAGTTTCAGAAAAATTTTAAATCTGAATATCCAAAGGAAGACAACGGCCAGCCAGGAATTCATGCACTACGAGCATATGATGGCATTGCTGTCATCACATGGGCCCTGGAGAGATTAGTTGGTGATACTGATACTCCAAAAATGTTGTTAAAAAATATATTATCAAGCAACTTTAGTGGTTTAAGTGGAACAATTAATTTTTCAAATTCAAATTCGTTGCCATTCAGGATTATAAACTTTGTTGGAAAAGGCTACAAGGATCTTGACTTTTGGACACAGGACTTGGACAACCCTTTCAGCAGAGAAGGTGGAGACAAAAATAGCGGTAGAAACACCACAAGGATTTTGGAGGGTCCAGTGATTTGGCCAGGGTGCCCTCTTGATCTACACCATGTTCATAGTTTGGGTACTGGATCGTACCAATCCAATAATCCAGCATTCAGAGGCCCATGGAAGAGTCAGCTCGGGACTGCTCTTTGGTTCACCTTCTCTTCTCTTTTCTTTGCTCATAGGGAGACAATTCGTAGCAATATTACTCGAGTAGTGATAGTGGTGTGGCTGTTTGTAGTCTTCGTTTTAACCTCGAGCTACACTGCTAGTCTCTCTTCAATGCTCACTGTCCGACGACTTGAACCCAATGTGATGGATATCGAATGGCTAAAAGCTACTAGGTCTGTGGTTGGTTGTGATGGTGCTGCATTTACGAGGGAATACTTAGAGAACGTGTTTAAATTCGAAGGAGCTGATATCAAGAATATTAGCAACCAATACCAATATCCTGGCGAATTCCAGAGTGGGAACATGTCAGCTGCCTTTCTTCAACTTCCTTATGCAAAAGTTTTCACCAGCCAGTTCTGCAAGAATTACACTGCCGGCCAACCCCTCAACAGATTTGGAGGATTAGTCTTTGCCTTTCAGAAAGGCTCTCCATTAGCTGCTGATGTTTCTGAAGCCATCCTAACCATATCTGAGAAGAGGATTCTAAAAGCATTAGAAGAAAAGTGGTTTCCTTGTTCTGCCGAGTGTTCAGCCACCGAAAATGATGAACTGAGCCTCGGGAACTTCTGGGCTCTCTACCTTTTATGTGGCGCCACTTCCACCCTCTACATTGTACTGTTCTTCCTTCGCCTGCTCATCGATTTTAATCGTAAACAGCCATCCAGAAGTGATGAAAGTGTCTGGATGAAGACTGTTCAATTAGTACATTTCTTTCATAATGGACAAACTGAGATTCCTAATGAAAGACTGTCAAATTTGTCTTCTCGTTCCACTGGAGATGAATGGATCTCTGCAAGGTGGTCAACAGTGAGCCCTTCTGATGCCCGGAGCCTCTTGAGGCCTCTCCACCTACTGCGACTATGA 2127 0.4419 MTAMKIAVDKFNNNSKNHKHSIISRDFTGELNRAALIAEELIKEKKVQVIVGMDTWQQAALAAEIGNQAQVPVLSLAASASVRPSRQLGRPTLVQMGTNVSEQIRCISAIVYSYHWRSVITIYEDDAYGGNAELLTILSEALQGVGSEIEYHLSLPPISSLSDPRGAVHQELLKLLSTQSRVFIVLQSSLPMAIHLFQEARRMDFMGKDSAWIVTDSISSFLDSMDTSVIPYMEGALGIKSCYSKSNRPFQEFSAQFQKNFKSEYPKEDNGQPGIHALRAYDGIAVITWALERLVGDTDTPKMLLKNILSSNFSGLSGTINFSNSNSLPFRIINFVGKGYKDLDFWTQDLDNPFSREGGDKNSGRNTTRILEGPVIWPGCPLDLHHVHSLGTGSYQSNNPAFRGPWKSQLGTALWFTFSSLFFAHRETIRSNITRVVIVVWLFVVFVLTSSYTASLSSMLTVRRLEPNVMDIEWLKATRSVVGCDGAAFTREYLENVFKFEGADIKNISNQYQYPGEFQSGNMSAAFLQLPYAKVFTSQFCKNYTAGQPLNRFGGLVFAFQKGSPLAADVSEAILTISEKRILKALEEKWFPCSAECSATENDELSLGNFWALYLLCGATSTLYIVLFFLRLLIDFNRKQPSRSDESVWMKTVQLVHFFHNGQTEIPNERLSNLSSRSTGDEWISARWSTVSPSDARSLLRPLHLLRL* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0220 708 Gene3D - 1 102 - -
Vvi10g0220 708 Gene3D - 379 503 - -
Vvi10g0220 708 Pfam Receptor family ligand binding region 2 330 IPR001828 -
Vvi10g0220 708 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 399 644 IPR015683 -
Vvi10g0220 708 SUPERFAMILY Periplasmic binding protein-like II 447 596 - -
Vvi10g0220 708 CDD PBP1_GABAb_receptor_plant 1 356 IPR044440 -
Vvi10g0220 708 Gene3D - 516 599 - -
Vvi10g0220 708 FunFam Glutamate receptor 394 503 - -
Vvi10g0220 708 FunFam Glutamate receptor 103 271 - -
Vvi10g0220 708 SUPERFAMILY Periplasmic binding protein-like I 2 347 IPR028082 -
Vvi10g0220 708 Pfam Ligand-gated ion channel 401 619 IPR001320 GO:0015276|GO:0016020
Vvi10g0220 708 SMART GluR_14 292 593 IPR001320 GO:0015276|GO:0016020
Vvi10g0220 708 Gene3D - 103 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0220 Vvi-Chr10 2007440 2013209 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0220 370 648 Ion Channels AT3G51480 34.256 2.08e-45 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0220 - - vri:117904323 660.218