Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0214 ATGGATTTTATGGGGAAAGACTCAGCCTGGATAATTACAGATAGCATTTCAAGCTTCCTGGATTCCATGGACACCTCCTTTATCTCCTATATGGAAGGGGCTCTAGGAATCAAGTCCTACTATTCCAAATCCAATAGGCCCTTCCAAGAATTCTCTGCCCAGTTTCAGAAAAATTTTAAATCTGAATACCCAGAGGAAGACAACGCCCAGCCAGGAATTCATGCACTACGAGCATATGATAGCATTGCTGTCATCACACGGGCCCTGGAGAGATTAGCTGATGATACTAATACTCCAAAAATAAATTTTGTGCCTGTCTCTTGTGAATCAAATACATGGAAGACCTATGATGCTGTGGTTGGGGATGTGACAATACTTGCCACCCGTTCAAAAAAAGTGGAATTCACAGTGCCATATGCTGAGTCGGGATTGGTGATAGTACAAGTAACGTCTGAAGAACCTCACAAGGCATGGATGTTCCTGAAGCCTTTCACTAGGAAAATGTGGGTAACCACTGGTGCACTCTTGGTCTACACCATGTTCATAGTTTGGGCAATGGAGTACCAATCCAACAATCCGGCATTCAGAGGCCCATGGAGGAGTCAGCTTGGGACTGCTCTTTGGTTCACCTTCTCTTCTCTTTTCTTTGCTCATAGGGAGACAATTCGTAGCAATATTACTCGAGTAGTGATAGTGGTGTGGCTGTTTGTAGTCTTCATTTTAACCTCGAGCTACACTGCTAGTCTCTCTTCCATGCTCACTGTCCGACGACTTGATTCCAATGTGATGGATATCGAATGGCTAAAAGCTACTAGGTCTGTGGTTGGTTGTAATGGTGCTTCATTTGTGAGGAAATTCTTGGAGAATGTGACTAAATTCGAAGCGGCTGATATCAAGAATATTAGCAGCCAATACCAATACCCCGGCGAATTCCATAGTGGGAATATCTCAGCTGCCTTTCTTGAACTTCCTTATGCGAAAATTTTCACTAGTCAGTTCTGCAAGAATTACACTGCCGGTCAACCCCTCAACAGATTCGGAGGATTAGGCTTTGCCTTTCAGAAAGGCTCTCCACTAGCTGCTGACTTCTCTGAAGCCATCCTAACCCTATCTGAGAAGGGGAGAATAAAAGAATTAGAAGATAAGTGGTTTCCTCGTTCTGCCGAGTGTTCCACCACCGAAACTGATGAACTGAGCCTCAGGAACTTCTGGGCTCTCTACCTTTTATGTGGCGCCACTTCCACCCTCTGCTTTCTACTATTCCTCCGTCGCCTGCTCATCGAGTTTAAACGCCACCAGGCATCCAGAAGTGATGCAAGCCCAAGTGATGAGAGTGTCTGGATGAAGACTGTTCAATTGGTACATTTCTTTCATCATGGACACACTGAGATTCCTGATGAAAGACCGTCAAATTTGTCTCCCTGTCCCGCCGGAGATGAATGGAGCTCTCCAAGGTTGTCACTAGAGAGCCCTTCTGATGCCCCGGAGCCTTCGGAGGCCTCCCCACCTACTGCGACTATGAACTCAAGGGTGAACGCTTCTGATGTGCTGGAGCCTCCTGAGACCTCTCCCCACAACCATGTACCCTAG 1590 0.4623 MDFMGKDSAWIITDSISSFLDSMDTSFISYMEGALGIKSYYSKSNRPFQEFSAQFQKNFKSEYPEEDNAQPGIHALRAYDSIAVITRALERLADDTNTPKINFVPVSCESNTWKTYDAVVGDVTILATRSKKVEFTVPYAESGLVIVQVTSEEPHKAWMFLKPFTRKMWVTTGALLVYTMFIVWAMEYQSNNPAFRGPWRSQLGTALWFTFSSLFFAHRETIRSNITRVVIVVWLFVVFILTSSYTASLSSMLTVRRLDSNVMDIEWLKATRSVVGCNGASFVRKFLENVTKFEAADIKNISSQYQYPGEFHSGNISAAFLELPYAKIFTSQFCKNYTAGQPLNRFGGLGFAFQKGSPLAADFSEAILTLSEKGRIKELEDKWFPRSAECSTTETDELSLRNFWALYLLCGATSTLCFLLFLRRLLIEFKRHQASRSDASPSDESVWMKTVQLVHFFHHGHTEIPDERPSNLSPCPAGDEWSSPRLSLESPSDAPEPSEASPPTATMNSRVNASDVLEPPETSPHNHVP* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0214 529 SUPERFAMILY Periplasmic binding protein-like I 1 96 IPR028082 -
Vvi10g0214 529 Gene3D - 318 346 - -
Vvi10g0214 529 Pfam Bacterial extracellular solute-binding proteins, family 3 114 385 IPR001638 -
Vvi10g0214 529 FunFam Glutamate receptor 157 296 - -
Vvi10g0214 529 Gene3D - 158 303 - -
Vvi10g0214 529 Gene3D - 1 70 - -
Vvi10g0214 529 Gene3D - 347 384 - -
Vvi10g0214 529 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 97 IPR015683 -
Vvi10g0214 529 MobiDBLite consensus disorder prediction 462 529 - -
Vvi10g0214 529 SUPERFAMILY Periplasmic binding protein-like II 100 386 - -
Vvi10g0214 529 MobiDBLite consensus disorder prediction 499 516 - -
Vvi10g0214 529 FunFam Glutamate receptor 296 390 - -
Vvi10g0214 529 Pfam Ligand-gated ion channel 386 412 IPR001320 GO:0015276|GO:0016020
Vvi10g0214 529 Gene3D - 87 157 - -
Vvi10g0214 529 SMART GluR_14 81 386 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0214 Vvi-Chr10 1941762 1944755 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0214 108 457 Ion Channels AT1G42540 37.500 3.30e-74 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0214 - - vvi:104880541 808.52