Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0206 ATGGCTACTGGAGGTGATCCTCATGCTGAATCAGAAGCAATGCTAGAGAACGTGTGGGCGAGTTTTATAGGTGGAGCAGAATTCAGCGGAGAGACAGAAAAGACGCCTGAATTATCCAAAGCTTGGGAAGGACTGCCCTGCCTTGATGGGAGAGACGGATCCATGGAAATTCTACAAAGGCTACCAAGCCTAGGAAGATGGATATCAATGGGCGCCGAGACTTGGGAGGAGCTTCTTGATAGTACCATTCCTGAGCGCAACACAGAACAGTCATGTAACCATGATCTAGAAAGCAGTACTACTAGCTCCATCTCGGGCACAAAGGTGAATGCTATGAAAACAGAGAAGGTGGCATCCCCACACTATAGAGGAGTGAGGAGGCGGCCATGGGGCAAGTATGCAGCAGAGATAAGAGACTCGACAAGAAAAGGAGCCCGAGTTTGGCTTGGAACCTTTGAAACAGCTGAGGAAGCTGCTTTGGCTTATGACAAGGCGGCTTTAAGAATAAGAGGCGCAAAGGCATATCTCAACTTCCCACTTGAGACTGTTGCCAGGGCCAGAGGAATTGCTTGTTCAGGAAAAGGATTGAGTTATTCATCTACTGCTTCTCAAGCGTACGGCTCAGCATCTCCAATTCTTGGCTGCAACGAGAGGATTTCCAATCCTCGGAAGAGACCATCAACAAACTGGGAAGAAAACAACGAAGTGAAGATGGAAAAACCTCCATCAAAGAAAATGGCAAGCTTAGAAGATGTATACTGGAACGAATTTGATGTACTGGAGTTTCCGGACCTTGGGAGCGATTACTTAGACAGTTTGCTGTCCTCTATCTAA 834 0.4724 MATGGDPHAESEAMLENVWASFIGGAEFSGETEKTPELSKAWEGLPCLDGRDGSMEILQRLPSLGRWISMGAETWEELLDSTIPERNTEQSCNHDLESSTTSSISGTKVNAMKTEKVASPHYRGVRRRPWGKYAAEIRDSTRKGARVWLGTFETAEEAALAYDKAALRIRGAKAYLNFPLETVARARGIACSGKGLSYSSTASQAYGSASPILGCNERISNPRKRPSTNWEENNEVKMEKPPSKKMASLEDVYWNEFDVLEFPDLGSDYLDSLLSSI* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0206 277 PANTHER DNA-BINDING DOMAIN 100 234 IPR044808 GO:0003700|GO:0009873
Vvi10g0206 277 SMART rav1_2 121 185 IPR001471 GO:0003700|GO:0006355
Vvi10g0206 277 CDD AP2 120 179 IPR001471 GO:0003700|GO:0006355
Vvi10g0206 277 SUPERFAMILY DNA-binding domain 121 181 IPR016177 GO:0003677
Vvi10g0206 277 MobiDBLite consensus disorder prediction 87 106 - -
Vvi10g0206 277 FunFam Ethylene-responsive transcription factor 2 121 181 - -
Vvi10g0206 277 Gene3D AP2/ERF domain 121 181 IPR036955 GO:0003700|GO:0006355
Vvi10g0206 277 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Vvi10g0206 277 PRINTS Ethylene responsive element binding protein signature 145 161 IPR001471 GO:0003700|GO:0006355
Vvi10g0206 277 MobiDBLite consensus disorder prediction 224 242 - -
Vvi10g0206 277 Pfam AP2 domain 120 171 IPR001471 GO:0003700|GO:0006355
Vvi10g0206 277 ProSiteProfiles AP2/ERF domain profile. 121 179 IPR001471 GO:0003700|GO:0006355
Vvi10g0206 277 MobiDBLite consensus disorder prediction 220 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0206 Vvi-Chr10 1825840 1826673 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0206 1 277 AP2-EREBP Transcription Factor Family AT4G18450 38.957 6.72e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi10g0206 AP2 6.1e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0206 - - vvi:100241795 530.406