Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0205 ATGGCTCCAACTTGCCAGAGCGAGTTGCCTCTCAATGAGAATGACTCACAAGACATGGTCATATACCAAGTCCTAAACGAGGCTTTTGCACTCAACAACTCAATTATCCCACCAATTAAGCGCCAAACCACTCCCACGTCCAGCGCCCTGGAACCTGCTCGGACAATAGCCAAGAAGCACTACAGGGGCGTGAGGCGTCGCCCCTGGGGAAAGTACGCTGCGGAGATCCGGGACTCAGCTAAACATGGTGCACGTACATGGCTAGGCACCTTCGAAACTGCCGAAGAGGCTGCCTTGGCTTACGATAGGGCTGCTTTCCGGATGCGGGGTTCCAAGGCTCTGCTCAATTTTCCAGCTGAAGTGGTGGCTGCATCCTCCCAGAGAACGCCCAAGCCTAATTTGAGCTCCGAGAACTTGAAAAGGGATGCCTCCAATTCCAGTAATAGCTCCGCTGCCTCTTGA 462 0.539 MAPTCQSELPLNENDSQDMVIYQVLNEAFALNNSIIPPIKRQTTPTSSALEPARTIAKKHYRGVRRRPWGKYAAEIRDSAKHGARTWLGTFETAEEAALAYDRAAFRMRGSKALLNFPAEVVAASSQRTPKPNLSSENLKRDASNSSNSSAAS* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0205 153 Gene3D AP2/ERF domain 59 120 IPR036955 GO:0003700|GO:0006355
Vvi10g0205 153 SMART rav1_2 60 124 IPR001471 GO:0003700|GO:0006355
Vvi10g0205 153 CDD AP2 59 119 IPR001471 GO:0003700|GO:0006355
Vvi10g0205 153 MobiDBLite consensus disorder prediction 125 153 - -
Vvi10g0205 153 FunFam Ethylene-responsive transcription factor 2 59 120 - -
Vvi10g0205 153 Pfam AP2 domain 60 110 IPR001471 GO:0003700|GO:0006355
Vvi10g0205 153 SUPERFAMILY DNA-binding domain 60 120 IPR016177 GO:0003677
Vvi10g0205 153 ProSiteProfiles AP2/ERF domain profile. 60 118 IPR001471 GO:0003700|GO:0006355
Vvi10g0205 153 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Vvi10g0205 153 PRINTS Ethylene responsive element binding protein signature 84 100 IPR001471 GO:0003700|GO:0006355
Vvi10g0205 153 PANTHER DNA-BINDING DOMAIN 47 142 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0205 Vvi-Chr10 1822736 1823197 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0205 7 121 AP2-EREBP Transcription Factor Family AT4G17500 52.414 4.25e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi10g0205 AP2 1.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0205 K13433 - vvi:100264074 277.715