Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0203 ATGGCTTCATCTAATAGACACTGGCCCAGTATGTTTAAGTCCAAGCCCTGCAACACTCATCACCAATGGCAGCATGACATCAACCCATCTCTCATTTCAAGTGGATGCCACAGACCCCCTTATACATCAGTGCCTGGATGTGAAGAGCGGAGTCCAGAGCCAAAGCCGAGATGGAATCCAAAACCGGAGCAAATACGCATACTTGAAGCTATCTTCAACTCGGGCATGGTGAATCCTCCGAGGGATGAGATAAGGAAGATCAGAGCTCAATTACAGGAGTTCGGTCAAGTCGGCGACGCCAACGTCTTTTACTGGTTTCAGAACAGAAAATCAAGAAGCAAACACAAACAGCGCCACCTCCAAACCTCAAAACAACAGCCACAACAAACCCCTCCAATCACTTCCAATGCCTCTATAACTCCATCATCTTCGTCATCATCCTCTGAAAAATCATCCCCAAAAGAGTCAAACAAAAGCTTGCCATTGGGTTCTGCAGGCTTCATGGATGTTTCGAATTCTCCTACCGCCCCCCTGAACCAGACCTACTTTCAGAACTCCGGCGAGTTTCTGCAGGAACCTTTGTTCTTCCCGGTGCCACAGACCGGAGGGAGCACCGTGTTCTCCCATGGACTCTGCTTCTCTGAACTATCCAATGTTGTCCAAATTCCTGATCAGACGGTGGGAGCTTACTCGGGCCTTCTACTCACTGAATTGATGAATCAGGGAGTTTCTAAGAAATACGATGAAGAAGAGAAGATGAAGTTGCAACAACAACTGAGTTACACCGTAGCCACTCTTCCACCCACCACCAGCGTTCCGCCTCCCACTACGCTAACTCTTCCTTTCACCATCAACCAAATTCAAGGTGTTGGAGAATCGGGTGCACTGGGCCCTACCTCTGCTGCGAAATCAACGGTCTTCATTAACGACGTGGCTTTCGAGGTGGCAGTGGGCCCCTTCAACGTGCGTGAGGCTTTCGGGGACGACGCCGTTTTGATCAACTCCTACGGCCACCCTGTGCTCACCAATGAGTGGGGTGCCACCCTCCAGTCACTACAGCACGGCGCATTTTACTACCTGGTGCGCACCTTAAGCCCATCATTCTGTGAAAAGCATGAGAGTACAGAGCTGATTTGGTAG 1140 0.5 MASSNRHWPSMFKSKPCNTHHQWQHDINPSLISSGCHRPPYTSVPGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEFGQVGDANVFYWFQNRKSRSKHKQRHLQTSKQQPQQTPPITSNASITPSSSSSSSEKSSPKESNKSLPLGSAGFMDVSNSPTAPLNQTYFQNSGEFLQEPLFFPVPQTGGSTVFSHGLCFSELSNVVQIPDQTVGAYSGLLLTELMNQGVSKKYDEEEKMKLQQQLSYTVATLPPTTSVPPPTTLTLPFTINQIQGVGESGALGPTSAAKSTVFINDVAFEVAVGPFNVREAFGDDAVLINSYGHPVLTNEWGATLQSLQHGAFYYLVRTLSPSFCEKHESTELIW* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0203 379 Gene3D - 55 121 - -
Vvi10g0203 379 SMART HOX_1 53 120 IPR001356 GO:0003677
Vvi10g0203 379 CDD homeodomain 54 117 IPR001356 GO:0003677
Vvi10g0203 379 MobiDBLite consensus disorder prediction 122 159 - -
Vvi10g0203 379 ProSiteProfiles 'Homeobox' domain profile. 51 116 IPR001356 GO:0003677
Vvi10g0203 379 SUPERFAMILY Homeodomain-like 50 121 IPR009057 -
Vvi10g0203 379 MobiDBLite consensus disorder prediction 114 168 - -
Vvi10g0203 379 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 362 IPR044557 GO:0003700|GO:0050793
Vvi10g0203 379 Pfam Homeodomain 55 115 IPR001356 GO:0003677
Vvi10g0203 379 FunFam WUSCHEL-related homeobox 11 55 122 - -
Vvi10g0203 379 MobiDBLite consensus disorder prediction 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0203 Vvi-Chr10 1805924 1807777 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0203 1 361 Wox Gene Family AT2G33880 45.966 4.47e-88 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vvi10g0203 Homeodomain 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0203 - - vvi:100258905 701.434