Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0195 ATGGATCTCATTCATGGCGAGGGAGGAAGTGAGTTGTTTCAAGCTCAATCTCATATGTACAAGCATATTTTTAACTTCATAAATTCCATGGCACTCAAGTGTGCAGTTGAGCTAGGCATACCTGACATAATCCACACCCATAACCATCCCATCAGTCTTCCCCAGTTGGTCTCCGCCCTTCATCTCCCCCCTACAAAAACCAGGTATGTGAACCGGCTCATGCGTGTGTTGGTGCATTCGGGCTTCTTTGCCACAGCAAAAGTTCATGAAAATCAAGAAGAAGAAGATGAAGGGTATGTTCTCACAACTTCTTCTAGGCTACTCCTCAGCAAGGATAACAATAATGTTCCCAACTTGTCAGCCTTCGTTCTGGCAATGCTCGATCCAGTCTTGGTAACTCCTTGGCACTTCCTAGGAGACTGGTTCAGAGGGAATGACCTCACAGCATTCGATACTGCGCATGGGAAGAGTTTTTGGGACTATGGAAGCCATGATCATAAATTTTTCAACCTTTTCAATGAAGCAATGGCCAGTGATTCTCGAATGATGAGTTTGGTCATTAAAGATTGCAGACCAGTTTTTGAGGGGTTGGGTTCGTTGGTTGATGTAGGGGGCGGCAAGGGGCTTATTGCCAGGATCATTTCCGAGGCCTTTCCTCAATTGAAATGTACAGTATTTGACCTCCCACATGTCGTTTCTAACTTTCCAGAGTGTGGGAACTTGAAGTATGTTGGAGGCGATATGTTTCAGTCTGTCCCTACTGCAGATGCCATCCTACTTAAGTTGGTTTTGCATTCTCTGAGTGATGAGGAATGCGTGAAGATACTGAAAAAATGCAGAGAAGCAATTCCAAGCAAAGAGAAGGGAGGAAAGGTTATTGTCATAGACATAGTGATAAATGAAAAGAAAGAAGAACATGATATAACTGAAGCGAAGCTCCTGTTTGACCTACTGATGATGACTGTGGTTACTGGGAGGGAAAGAAATGAGAAAGAATGGGAAAAGCTTTTCTTGGAGGCTGGTTTCAGCCATTACAAGATAAACCCCATATTCGGTTTAAGGTCCCTTATTGAGGTGTTCCCTTAG 1086 0.4383 MDLIHGEGGSELFQAQSHMYKHIFNFINSMALKCAVELGIPDIIHTHNHPISLPQLVSALHLPPTKTRYVNRLMRVLVHSGFFATAKVHENQEEEDEGYVLTTSSRLLLSKDNNNVPNLSAFVLAMLDPVLVTPWHFLGDWFRGNDLTAFDTAHGKSFWDYGSHDHKFFNLFNEAMASDSRMMSLVIKDCRPVFEGLGSLVDVGGGKGLIARIISEAFPQLKCTVFDLPHVVSNFPECGNLKYVGGDMFQSVPTADAILLKLVLHSLSDEECVKILKKCREAIPSKEKGGKVIVIDIVINEKKEEHDITEAKLLFDLLMMTVVTGRERNEKEWEKLFLEAGFSHYKINPIFGLRSLIEVFP* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0195 361 Gene3D Vaccinia Virus protein VP39 113 361 IPR029063 -
Vvi10g0195 361 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 361 IPR016461 GO:0008168
Vvi10g0195 361 SUPERFAMILY "Winged helix" DNA-binding domain 9 112 IPR036390 -
Vvi10g0195 361 PIRSF O-mtase 1 361 IPR016461 GO:0008168
Vvi10g0195 361 FunFam O-methyltransferase ZRP4 113 361 - -
Vvi10g0195 361 Pfam O-methyltransferase domain 135 343 IPR001077 GO:0008171
Vvi10g0195 361 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Vvi10g0195 361 PANTHER O-METHYLTRANSFERASE 13 346 IPR016461 GO:0008168
Vvi10g0195 361 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 118 359 IPR029063 -
Vvi10g0195 361 Gene3D - 4 108 IPR036388 -
Vvi10g0195 361 FunFam Coniferyl alcohol 9-O-methyltransferase 3 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0195 Vvi-Chr10 1742927 1744200 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0195 30 347 Monolignol Biosynthesis Gene Families AT5G54160 34.365 1.01e-49 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0195 K22588 - vvi:100248671 728.398