Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0193 ATGGATCTTATTCATGGAGAGGGAGCAGGTGAGTTGTTTCAAGCTCAATCTCATATGTATAAACATATTTGTAGCTTCATGAATTCCATGGCACTTAAATGTGCAGTTCAGCTAGGCATTCCTGACATAATCCACAACCATGCCCACCCCACGACTCTTCCCCAGTTGGTCTCCGCGCTTCATATCCCCCCCACAAAAGCCAGTTGTGTGCACCGGCTCATGCGTTTGCTGGTGCATTCTGGCTTCTTTGCTATAGCAAAAGTTCATGAACATGAGGAAGAAGAAGGCTATATTCTCACACCTTCTTCTAGGCTCCTCTTCAAAGACAACCCAACTTCCAACTTATCACCCTTCGTTTTGACCGTGCTTCATCCAGCATTGGTAACTCCTTGGCATTTCTTTGGAGACTGGTTGAGAGGGGATGACCTGACAGCCTTTGAGACCGCACATGGGGTGAGCTTTTGGGACCATGGGAGCCATAACCCTGAAATTTTCAATCTTTTCAATGAAGGAATGGCCAGTGACTCTCAAATGATGAGTGTGGTTAATTTTAGAGAGTTGAAGCCAGTTTTTGAGGGGTTGAGTTCATTGGTAGATCTGGGAGGTGGGACAGGTCTTCTTGCCAGGATCATTTCGGAGGCCTTCCCTCAATTGAAATGCACAGTTTTTGACCTTCCCCACGTTGTTGCTAACTTACCAGAGAGTAGGAACTTGGAGTATGTTGGAGGTGATATGTTTCAGTCCGTCCCTTCTGCCGATGCCATTCTACTTAAGTGTGTCCTGCATGATTGGAGTGATGAAGATTGCCTGAAGATACTGAAGAAATGCAGAGAAGCAATTCGAAGCGAAGAAGAGGGAGGAAAGGTTATCATCATAGACGTAGTGATAAATGAAAAGAAAGATGAAGATGACATAACAGAAACAAAGCTACTGATGGACATGATGATGATGACACTGGTAAATGGAAGAGAAAGAAATGAGAAAGAGTGGGAAAGGCTCTTCTTGGAGGCTGGTTTCAGGCACTATAAGATAACCCCCATATTTGGTCTAAGGTCCCTTATTGAGGTGTTTCCTTAG 1077 0.4466 MDLIHGEGAGELFQAQSHMYKHICSFMNSMALKCAVQLGIPDIIHNHAHPTTLPQLVSALHIPPTKASCVHRLMRLLVHSGFFAIAKVHEHEEEEGYILTPSSRLLFKDNPTSNLSPFVLTVLHPALVTPWHFFGDWLRGDDLTAFETAHGVSFWDHGSHNPEIFNLFNEGMASDSQMMSVVNFRELKPVFEGLSSLVDLGGGTGLLARIISEAFPQLKCTVFDLPHVVANLPESRNLEYVGGDMFQSVPSADAILLKCVLHDWSDEDCLKILKKCREAIRSEEEGGKVIIIDVVINEKKDEDDITETKLLMDMMMMTLVNGRERNEKEWERLFLEAGFRHYKITPIFGLRSLIEVFP* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0193 358 SUPERFAMILY "Winged helix" DNA-binding domain 10 111 IPR036390 -
Vvi10g0193 358 Gene3D Vaccinia Virus protein VP39 109 358 IPR029063 -
Vvi10g0193 358 CDD AdoMet_MTases 197 296 - -
Vvi10g0193 358 PIRSF O-mtase 1 358 IPR016461 GO:0008168
Vvi10g0193 358 Gene3D - 4 106 IPR036388 -
Vvi10g0193 358 PANTHER O-METHYLTRANSFERASE 13 343 IPR016461 GO:0008168
Vvi10g0193 358 FunFam Coniferyl alcohol 9-O-methyltransferase 3 106 - -
Vvi10g0193 358 FunFam O-methyltransferase ZRP4 109 358 - -
Vvi10g0193 358 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 114 356 IPR029063 -
Vvi10g0193 358 Pfam O-methyltransferase domain 131 340 IPR001077 GO:0008171
Vvi10g0193 358 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Vvi10g0193 358 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 358 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0193 Vvi-Chr10 1732116 1733364 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0193 30 357 Monolignol Biosynthesis Gene Families AT5G54160 33.934 3.86e-52 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0193 K22588 - vvi:100260643 716.072