Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0189 ATGGTGGCTATGATCGATCTCAACACCGTCGACGACGACGAGACACCCTCGTCTGGGTCGTCGTCTTCCTCCTCCTCATCCGCCTCTGCTTCTGCTTCCACAGTTTGTGGTTCTTTGTTGTCGGCGGCGTCGTCGGTATGTTTGGAGCTGTGGCACGCGTGTGCTGGCCCGCTCATATCGCTTCCGAAGAAAGGCAGCCTTGTGGTGTACTTTCCACAGGGCCACCTGGAGCAGCTTTCTGATTATCCGGCCGTAGCCTATGATCTCCCGCCTCACGTCTTCTGTCGAGTGGTTGATGTCAAGCTCCATGCCGAGGTAGTTACGGATGAAGTTTACGCACAGGTCTCGCTGGTTCCTGAAACCAAGATTAAGCAGAAACTGCAGGAAGGGGAAATTGAAGCAGATGGTGGTGAAGAAGAGGATATTGAGGGTTCTATCAAGTCCATGACACCCCACATGTTCTGCAAAACTCTTACTGCTTCAGATACTAGCACCCATGGGGGTTTTTCTGTCCCCCGCCGAGCTGCAGAGGACTGTTTTCCTCCCCTGGATTACAAACAGCAGAGACCTTCACAAGAGCTTGTGGCCAAAGATTTGCATGGCTTCGAATGGAGATTCCGGCATATCTACAGGGGGCAGCCAAGGCGGCATTTGCTTACTACTGGTTGGAGTGCATTTGTAAACAAGAAGAAGCTTGTGTCTGGAGATGCTGTACTCTTTCTTAGGGGTGGGGATGGAGAACTAAGACTGGGAATCCGAAGAGCAGCTCAAATTAAAGGTTCGTCTCCTTTCCCAGCTCTTTGTAGCCAACAGTTGAATCTCAACACCCTTACAGCTGTGGTCAATGCTATATCCACAAGAAGTGTTTTCAACATATGCTACAATCCGAGGGCTAGCTCATCAGAGTTCATAATACCGCTCCGTAAATTCTCAAAGAGCATTGATCATTCATTTTCTGCTGGGATGAGGTTCAAAATGCGTGTTGAAACAGAAGATGCAGCAGAACGAAGATATACTGGACTGATAACTGGGATCAGTGACATGGATCCTGTTAGATGGCCTGGTTCTAAATGGAGGTGCCTATTGGTAAGGTGGGACGATATAGAGGCTAATCGACATAACAGGGTTTCTCCATGGGAAATTGAGCTATCTGGTTCGCTTTCTGGTTCTGGCAGCTTGACAGTTCCTGGCTCAAAGAGGACCAGGATTGGTTTGCCGGGAACTAGACCAGATTTTTCAGTTCCCAATGGGATGGGAGTGTCAGACTTTGGGGAATCTTCAAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTTGGTTTTAACACTCCTTATGATGGTGTTGATACCCAGGATCATCATCCATCTGAAATAAGGTGTTTTCCTGGTTCAAGTTGTTCTGGGATTGCTGCAATAGGAAATGGTGTTAGAAACCCTCTTGGGAATTCTGATATTTCCTATAAAGGCATAGGCTTTGGTGAATCTTTTCGATTCCATAAGGTCTTGCAAGGTCAAGAAACATTTCCAAGCCCACCATGTGGAAGAGCTCTGTCTGCTAACCAGGCTCATGAAAATGGTAGCTTTGGAATCTTTGATGGTGTTCAAGTGCCGACTTCTAGAAATGGATGGCCTGCCCTTGTGCAGGGATATAATGCCCACACTCACCTGTCCACACCATCAGTGCAAGTGTCGTCACCATCATCGGTGTTAATGTTCCAGCAAGCAAGCACTGCTGCTCCTAACATTTACTCAATGCATAGCGCCAATAATCAGGAGAAGGAGCAAGAAATTAGTAACCGGAGTTCATTTGATATTCCTGAAGTGTATGGTGAAAAGCTCACACCATCACGTTGTGAGCTTAGTGTCAGGGGAGGAGGTCAGGGAGGTATGAATTTCTTTGGTCTGTTAAACGAGCATAATCAACTAGCTGTTCCACATCCTCTTGTAACTCAATCAGCATTTAGAGGCAGTCAAGATTTAGTTCCTACATGTAAAAGTAGCTGCAGGCTCTTTGGCTTTTCCTTAACGGAGGAAAGAAGCATTGGAAATAAAGTGGACAACCCCACTCCTGTTACATCTTCATTGATTCCTGGAACCTCTTTTCTGCCCCAGCAGTTGCACTCAGAGCCTCCGGTGATGACCAAGGCAATTGGAAGCAATTGTACCAAAGTAAGTGACTTCTATGCTGTAAGGGATATGCTTTTTGATATTGCGCTGTAG 2220 0.4689 MVAMIDLNTVDDDETPSSGSSSSSSSSASASASTVCGSLLSAASSVCLELWHACAGPLISLPKKGSLVVYFPQGHLEQLSDYPAVAYDLPPHVFCRVVDVKLHAEVVTDEVYAQVSLVPETKIKQKLQEGEIEADGGEEEDIEGSIKSMTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGFEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGGDGELRLGIRRAAQIKGSSPFPALCSQQLNLNTLTAVVNAISTRSVFNICYNPRASSSEFIIPLRKFSKSIDHSFSAGMRFKMRVETEDAAERRYTGLITGISDMDPVRWPGSKWRCLLVRWDDIEANRHNRVSPWEIELSGSLSGSGSLTVPGSKRTRIGLPGTRPDFSVPNGMGVSDFGESSRFQKVLQGQEIFGFNTPYDGVDTQDHHPSEIRCFPGSSCSGIAAIGNGVRNPLGNSDISYKGIGFGESFRFHKVLQGQETFPSPPCGRALSANQAHENGSFGIFDGVQVPTSRNGWPALVQGYNAHTHLSTPSVQVSSPSSVLMFQQASTAAPNIYSMHSANNQEKEQEISNRSSFDIPEVYGEKLTPSRCELSVRGGGQGGMNFFGLLNEHNQLAVPHPLVTQSAFRGSQDLVPTCKSSCRLFGFSLTEERSIGNKVDNPTPVTSSLIPGTSFLPQQLHSEPPVMTKAIGSNCTKVSDFYAVRDMLFDIAL* 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0189 739 ProSiteProfiles B3 DNA-binding domain profile. 154 256 IPR003340 GO:0003677
Vvi10g0189 739 MobiDBLite consensus disorder prediction 392 416 - -
Vvi10g0189 739 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 45 687 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi10g0189 739 Gene3D - 152 256 IPR015300 -
Vvi10g0189 739 MobiDBLite consensus disorder prediction 11 28 - -
Vvi10g0189 739 FunFam Auxin response factor 152 256 - -
Vvi10g0189 739 SMART B3_2 154 256 IPR003340 GO:0003677
Vvi10g0189 739 Pfam Auxin response factor 281 361 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vvi10g0189 739 Gene3D - 317 391 - -
Vvi10g0189 739 Pfam B3 DNA binding domain 154 255 IPR003340 GO:0003677
Vvi10g0189 739 SUPERFAMILY DNA-binding pseudobarrel domain 149 262 IPR015300 -
Vvi10g0189 739 FunFam Auxin response factor 317 388 - -
Vvi10g0189 739 CDD B3_DNA 152 254 IPR003340 GO:0003677
Vvi10g0189 739 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0189 Vvi-Chr10 1695978 1704509 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0189 153 510 B3 DNA Binding Superfamily AT2G33860 64.543 1.39e-154 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vvi10g0189 B3 5.2e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0189 K14486 - vvi:100245251 1426.77