Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0185 ATGGATTTCTTCCAATCCCAAGCCCGAAAACACCAACCCAAATTCAGCAAGAAAAGGCTCACCAAAGACCAGGTAAGACTCCTGGAAACAAGCTTCGACTTGAACAACAAGCTTGATTCCGACCGCAAGCTCCAGCTGGCCCAAGAACTCGGCATCCCACCACGGCAAGTTGCGATTTGGTATCAAAACAAGCGAGCCCGGTGGAAAAATCAGAGCCTTGAGCTCGAGTACAACGCCCTCCAGCTAAGGCTGGACGCTGCATTGGGAGATAAGAGGAAGCTTGAGAAAGAAGTTGATAGGCTGAAGCAAGAGTTGCAAAAGGCCCAGGAAGTCTTACTTTCTTGCAACGTAACTTACTCTACTCTTACTTCTCTCTCAACCTCTTGTGATGAAGATGGCAGCTCGAGCTTACTCGGGGACTCCAAACTCGGCCTGGACAAGGAACTCTATGCTTGTTTAATCGGTGGCGGAGATCAGTTTCCAAAGTCTGATGATAGCCATGGTCTCTTCACTTGA 516 0.4884 MDFFQSQARKHQPKFSKKRLTKDQVRLLETSFDLNNKLDSDRKLQLAQELGIPPRQVAIWYQNKRARWKNQSLELEYNALQLRLDAALGDKRKLEKEVDRLKQELQKAQEVLLSCNVTYSTLTSLSTSCDEDGSSSLLGDSKLGLDKELYACLIGGGDQFPKSDDSHGLFT* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0185 171 CDD homeodomain 14 72 IPR001356 GO:0003677
Vvi10g0185 171 PRINTS Lambda-repressor HTH signature 42 51 IPR000047 GO:0003677
Vvi10g0185 171 PRINTS Lambda-repressor HTH signature 51 67 IPR000047 GO:0003677
Vvi10g0185 171 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 11 126 IPR045224 GO:0003700
Vvi10g0185 171 SMART HOX_1 13 75 IPR001356 GO:0003677
Vvi10g0185 171 ProSitePatterns 'Homeobox' domain signature. 46 69 IPR017970 GO:0000981|GO:0006355
Vvi10g0185 171 ProSiteProfiles 'Homeobox' domain profile. 11 71 IPR001356 GO:0003677
Vvi10g0185 171 Gene3D - 6 76 - -
Vvi10g0185 171 Pfam Homeodomain 17 70 IPR001356 GO:0003677
Vvi10g0185 171 Coils Coil 63 118 - -
Vvi10g0185 171 SUPERFAMILY Homeodomain-like 13 79 IPR009057 -
Vvi10g0185 171 FunFam Homeobox-leucine zipper protein ATHB-52 7 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0185 Vvi-Chr10 1667098 1667613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0185 12 157 Homeobox Transcription Factor Family AT5G53980 48.980 5.66e-37 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vvi10g0185 Homeodomain 1.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0185 - - vvi:100262396 325.094