Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0182 ATGCCATGTTCAGTCTATTTTGGAGAAGTGGAGGAGCCAGGAGAGGAAATTCCCGTCTGGGATGGGCATAGAGGCTCAACAACAGGGATGACATGGTGTAATGACTCAGACGATGAAAGAGCTATTCAAATAATCTCAACCTCCTGTGAAGATAAGAGTGTCATCGATGCAAAGGCTGATGACATACTTCCGACACTAACATGCCCTTCATGTGGCCATCAAATAGAATTCCAAGATCAGGCCGGGATTCATGATTTACCGGGACTGCCTGCGGGAGTGAAGTTCGATCCGACAGACCAAGAGATTCTTGAACACTTAGAGGCAAAGGTGCTGTCTGATACACATAAGACACATCCCCTAATTGATGAATTTATCCCTACACTGGAGGGAGAGAATGGAATTTGCTACACTCACCCGGAGAAACTACCAGCTCATTTTCTATATATGCACATTCTGGATGATGCAGGAGTAAGCAAAGATGGTTTAATTCGTCACTTCTTTCATCGACCTTCAAAGGCATACACAACTGGGACGAGGAAAAGAAGAAAGGTGCATACCAATGAAGACGGAGGCGAGACAAGATGGCACAAAACAGGCAAGACTAGACCAGTTTTTGTTGGTGGGGCAGTGAAGGGATTCAAAAAGATACTGGTGCTCTATACCAACTATGGAAGGCAAAGGAAGCCGGAGAAGACAAACTGGGTAATGCACCAGTACCATCTTGGCAATAATGAAGAAGAGAAAGATGGAGAGTTAGTGGTTTCAAAGGTTTTCTACCAAACACAGCCTAGACAATGTGGTTTGAGCATTAAGGATTCACTTGATAACAAATCAAATAGTCGAAGTGCGCATGATGGTCCGATAATAAAAAGCGCTGCATTGGTAGAATATTATCATCCATCTTTTATCTCTTATGACCAAGTAAGCCATAATAGAGAAAGCCCACCTCAGCTGATTCCCAACTTGGTAGTCCAAGGCGACGGGTCTTCCTTCATTCGACTAGCTGCTGATGCAAGCAAAGGAAACTTGAGAGGAAATAGAGATGGAAGAGCTGATATATAG 1062 0.4388 MPCSVYFGEVEEPGEEIPVWDGHRGSTTGMTWCNDSDDERAIQIISTSCEDKSVIDAKADDILPTLTCPSCGHQIEFQDQAGIHDLPGLPAGVKFDPTDQEILEHLEAKVLSDTHKTHPLIDEFIPTLEGENGICYTHPEKLPAHFLYMHILDDAGVSKDGLIRHFFHRPSKAYTTGTRKRRKVHTNEDGGETRWHKTGKTRPVFVGGAVKGFKKILVLYTNYGRQRKPEKTNWVMHQYHLGNNEEEKDGELVVSKVFYQTQPRQCGLSIKDSLDNKSNSRSAHDGPIIKSAALVEYYHPSFISYDQVSHNRESPPQLIPNLVVQGDGSSFIRLAADASKGNLRGNRDGRADI* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0182 353 FunFam NAC domain-containing protein 73 98 264 - -
Vvi10g0182 353 Pfam No apical meristem (NAM) protein 90 241 IPR003441 GO:0003677|GO:0006355
Vvi10g0182 353 ProSiteProfiles NAC domain profile. 89 260 IPR003441 GO:0003677|GO:0006355
Vvi10g0182 353 Gene3D NAC domain 98 264 IPR036093 GO:0003677|GO:0006355
Vvi10g0182 353 SUPERFAMILY NAC domain 83 260 IPR036093 GO:0003677|GO:0006355
Vvi10g0182 353 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 50 291 IPR044799 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0182 Vvi-Chr10 1628584 1632082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0182 30 277 NAC Transcription Factor Family AT4G28500 68.379 2.81e-120 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi10g0182 NAM 1.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0182 - - vvi:100250388 641.728