Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0181 ATGAGCTATGGTGAGGGTATATCTTACGCAGTTGTTATGGCTCTCCTTTCGACATCCATCGTTATCCTCGGTGTCCTCCTTTTCATCCTTTGCAGGAAGAAACCGGTGGAGTCTGAAGAAACTCTTCCTATCAAGCTTTGTGCACAAGCGTGCCCTTTAACTGATATCGATGCAGCTACTGATTGCTTTAACCATCGTAGAATTATTGGTAAGGGTCGTCTGGGAACTGTATATGCAGCTTTGTCAGGAAGAGGGGAATTGGTTGCTGTGAAGAGAATCCATCCGGGGCTTGTTTTGAGCAATGCCTGTTTTGGGTTTTCGTCCATACTTAGGTCACTCTCTTTAGCTCAACATCCCAACATAGTATCCATCGTAGGGTTCTCAGAAGGCCCGGGGGAGAGAATTATTGTAATGGAGTTTGCTGGAATGGTGAGTTTGGACTTCTATTTGCAGCAGAACTCTGACGGGGCGTCTCTTTTGGATTGGGGCAGGCGTTTGAGGATTGCAGCAGGAGCAGCTAGAGGGCTTGAGTATTTGCATGAAGGGATGACACCCCATATTGTGCATGGCTGCATCAAAGCTTCAAATATCATAATAGATGTGAAGTTTTGTGCCAGAGTTTGTGATTATGGGCTTTCTTTCTTGGCACCCCATGAGAAGAGAGGCCTTGTGGGGTATGTGGATGATGAGTACTGGGCTGAGAGAGGGGGCGCTTCCAAGGAAAGTGATGTATACGGATTTGGAGTGATGTTGTTGGAGCTTTTGAGTGGGAGAAGAAGTGATGAAGGGTTACTTGTTGAGTGGGCATTGCCTTTGATTAAGGAAATGAACATCAGTGCGCTTTTGGATCCTAGACTTGTGATCCCATCTGATATGAAGCATCTTATCAGACTGGCTAAAGTTGCCTCAGCTTGTGTGGGCAATTCGAGGAAGAACAGACCTTCAATCGCTCAAGTGGTGGCCATTTTGAGCAGTCTGGAGATGGAGGTATGTCTTTGA 999 0.4635 MSYGEGISYAVVMALLSTSIVILGVLLFILCRKKPVESEETLPIKLCAQACPLTDIDAATDCFNHRRIIGKGRLGTVYAALSGRGELVAVKRIHPGLVLSNACFGFSSILRSLSLAQHPNIVSIVGFSEGPGERIIVMEFAGMVSLDFYLQQNSDGASLLDWGRRLRIAAGAARGLEYLHEGMTPHIVHGCIKASNIIIDVKFCARVCDYGLSFLAPHEKRGLVGYVDDEYWAERGGASKESDVYGFGVMLLELLSGRRSDEGLLVEWALPLIKEMNISALLDPRLVIPSDMKHLIRLAKVASACVGNSRKNRPSIAQVVAILSSLEMEVCL* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0181 332 Gene3D Phosphorylase Kinase; domain 1 30 140 - -
Vvi10g0181 332 Pfam Protein tyrosine and serine/threonine kinase 66 322 IPR001245 GO:0004672|GO:0006468
Vvi10g0181 332 PIRSF ILK 35 331 - -
Vvi10g0181 332 ProSiteProfiles Protein kinase domain profile. 63 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0181 332 Gene3D Transferase(Phosphotransferase) domain 1 144 330 - -
Vvi10g0181 332 FunFam serine/threonine-protein kinase-like protein ACR4 30 140 - -
Vvi10g0181 332 FunFam Receptor protein kinase CRINKLY4 141 330 - -
Vvi10g0181 332 SUPERFAMILY Protein kinase-like (PK-like) 44 323 IPR011009 -
Vvi10g0181 332 PANTHER OS01G0253100 PROTEIN 48 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0181 Vvi-Chr10 1625051 1626049 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0181 55 323 Receptor kinase-like Gene Family AT3G59420 41.343 6.38e-54 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vvi10g0181 PK_Tyr_Ser-Thr 2.9e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0181 - - vvi:100245261 651.744