Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0180 ATGCTTCTGCTACTGCTGTTGCTGGTTTCTCCTCTATTGGCTCTATCTATCAACCAGGAGGGTCTCTTCCTACAGCGAGTGAAGCAGGGTTTCGCCGACCCTACCGGAGCCTTATCCAACTGGAACGACCGCGACGACACCCCATGCAACTGGTATGGCGTCACCTGCGACCCCGAAACTCGGACAGTCAACTCACTCGACCTCTCCAACACTTACATTGCCGGACCTTTCCCCACGCTCCTCTGTCGTCTTCACGACCTCCATTCCCTCTCTCTCTATAACAACTCCATTAACTCCACACTGCCTGCCGACATTTCCACGTGTCAGAGTCTGGAGCACCTTAATCTCGGTCAGAACCTTCTCACAGGTGCCTTGCCATCCACTCTGGCCGACATGCCCAATCTCAGGCACTTGGATTTTACCGGGAATAACTTTTCCGGCGATATTCCGGAGAGTTTCGGCCGGTTCAGGCGATTGGAGGTTCTGTCTCTCGTTGGGAATCTTATGGACGGGACATTGCCGCCGTTTCTCGGAAACATTTCGACGCTTAAGCAGCTTAATTTGTCTTATAACCCGTTTGCGCCGAGTCGCATCCCGCCGGAACTCGGGAACCTGACGAGCCTTGAGATACTTTGGCTCACTCAATGTAACCTGGTGGGTCCAATTCCTGACTCGTTGGGTCGCCTCAAGCGTCTCACTGATTTGGACCTAGCCCTGAACTACCTCCACGGTCCAATTCCGAGTTCGCTCACTGGGTTGTCCAGCGTTGTCCAGATTGAGCTCTACAACAACTCGTTGTCCGGAGGGTTACCAGCCGGAATGCGGAACCTGACGACATTGCGACTGTTCGACGCGTCTACGAACGAATTAGATGGAACGATTCCAGATGAGTTGTGCCAGTTACCTCTCGAATCGCTTAATCTCTACGAGAATCGATTTGAGGGGAAGCTGCCTGAAAGCATTGCGGACTCGCCTAACTTGTACGAGCTCAGGCTGTTCCAGAACCGTCTCAGTGGGGTGTTGCCGAAAGATCTCGGAAAAAAATCGCCGCTGCTGTGGCTTGATATTTCGTACAATCAGTTTTCCGGTGCCATTCCGGCTAGTTTGTGTTCAAAAGGAGTGTTAGAAGAGCTTCTCTTGATCCACAACTCGTTTTCTGGTGAAATTCCTGCGAGTTTGAGTGAGTGTAGCAGTTTGACACGGGTTCGGTTAGGGAATAACCAGCTTTCCGGCGAGGTGCCGGCTGGATTCTGGGGACTTCCACGCGTATACTTACTTGAGCTTGCCCATAATTTATTTTCGGGGCAAATCGCAAAGACCATTGCCAGCGCGTCCAGTCTTCAACTTTTAATTATATGGAAGAACAGCTTTTCCGGAACTATACCGGACGAAGTCGGTGGGTTGGAGAATTTAGTTGATTTTTCAGGCAGTGACAATCAATTTAGTGGACCCCTTCCGGCGAGTATTGTAAATCTTAGACAGCTTGGTAAACTTGATCTTCATAACAACAAGCTCTCTGGTGAGCTCCCGTCTGGGATTCACACTTGGAAGAAGCTCAATATGCTCAATTTAAGAAATAACGGGTTTTCCGGGAATATTCCCAAGGAAATTGGAACCTTGAGCATTCTCAATTATCTTGATCTCTCAGAAAATCGGTTTTCCGGGAAAATCCCTGATGGGTTGCAGAATTTGAAGCTCAATGAGTTCAATTTTTCAAACAATAGGCTTTCAGGTGATATCCCCTCTTTGTATGCTAACAAAATTTACAGGGATAACTTTCTGGGTAATCCTGGTTTGTGTGGAGATCTTGATGGCTTGTGCAATGGCAGAGGTGAAGCTAAGAGTTGGGATTATGTGTGGGTGCTTCGATGCATCTTTATACTCGCCGCTGCAGTGTTAATTGTTGGTGTGGGTTGGTTCTATTGGAAGTATAGGAGTTTCAAGAAGGCAAAAAGAGCTATAGACAAATCAAAGTGGACATTGATGTCCTTCCATAAGTTGGGTTTCAGCGAATATGAGATCTTGGATTGCCTTGATGAAGATAATGTGATAGGGAGTGGAGGTTCAGGGAAGGTGTACAAGGCTGTTCTTAGCAATGGTGAGGCTGTTGCAGTGAAGAAGCTATGGGGAGGATCAAATAAAGGGAATGAAAGTGATGATGTTGAAAAAGGTCAAATTCAAGATGGATTTGAAGCAGAGGTTGATACCCTGGGTAAGATTAGGCACAAGAACATTGTTAAGCTATGGTGCTGTTGCACCACTAAGGATTGCAAGCTTTTGGTTTACGAGTATATGCCTAATGGTAGCTTGGGCGATTTGTTGCATAGTAACAAAGGAGGATTGCTGGATTGGCCAACGAGGTATAAGATTGCTTTGGATGCTGCGGAGGGGCTCTCTTATTTGCATCATGATTGCGTTCCTCCTATTGTGCATAGGGATGTGAAATCGAATAATATTTTGTTGGATGGGGATTTTGGAGCCCGGGTTGCAGATTTTGGTGTAGCTAAGGTGGTTGATACAACTGGAAAAGGGCCTAAATCCATGTCTGTCATAGCTGGTTCTTGTGGCTACATTGCACCAGAGTATGCATACACACTTCGTGTGAATGAGAAGAGTGATTTATACAGCTTTGGTGTGGTTATTCTTGAGTTGGTCACAGGGAGACATCCGGTTGATGCTGAGTTTGGGGAGGACTTGGTGAAGTGGGTGTGCACAACTTTGGACCAGAAAGGAGTGGACCATGTGCTTGATCCCAAACTCGATTCCTGTTTCAAGGAAGAAATATGCAAGGTCCTCAATATAGGTATTCTATGCACCAGTCCCCTTCCCATAAACCGCCCCTCAATGAGAAGGGTAGTGAAGATGTTGCAGGACGTGGGAGGAGAAAACCAGCCCAAGCCTGTGAAAAAGGATGGGAAATTGTCGCCCTATTATCATGAAGATGCTTCTGATCAGGGAAGTGTAGTTTGA 2970 0.4727 MLLLLLLLVSPLLALSINQEGLFLQRVKQGFADPTGALSNWNDRDDTPCNWYGVTCDPETRTVNSLDLSNTYIAGPFPTLLCRLHDLHSLSLYNNSINSTLPADISTCQSLEHLNLGQNLLTGALPSTLADMPNLRHLDFTGNNFSGDIPESFGRFRRLEVLSLVGNLMDGTLPPFLGNISTLKQLNLSYNPFAPSRIPPELGNLTSLEILWLTQCNLVGPIPDSLGRLKRLTDLDLALNYLHGPIPSSLTGLSSVVQIELYNNSLSGGLPAGMRNLTTLRLFDASTNELDGTIPDELCQLPLESLNLYENRFEGKLPESIADSPNLYELRLFQNRLSGVLPKDLGKKSPLLWLDISYNQFSGAIPASLCSKGVLEELLLIHNSFSGEIPASLSECSSLTRVRLGNNQLSGEVPAGFWGLPRVYLLELAHNLFSGQIAKTIASASSLQLLIIWKNSFSGTIPDEVGGLENLVDFSGSDNQFSGPLPASIVNLRQLGKLDLHNNKLSGELPSGIHTWKKLNMLNLRNNGFSGNIPKEIGTLSILNYLDLSENRFSGKIPDGLQNLKLNEFNFSNNRLSGDIPSLYANKIYRDNFLGNPGLCGDLDGLCNGRGEAKSWDYVWVLRCIFILAAAVLIVGVGWFYWKYRSFKKAKRAIDKSKWTLMSFHKLGFSEYEILDCLDEDNVIGSGGSGKVYKAVLSNGEAVAVKKLWGGSNKGNESDDVEKGQIQDGFEAEVDTLGKIRHKNIVKLWCCCTTKDCKLLVYEYMPNGSLGDLLHSNKGGLLDWPTRYKIALDAAEGLSYLHHDCVPPIVHRDVKSNNILLDGDFGARVADFGVAKVVDTTGKGPKSMSVIAGSCGYIAPEYAYTLRVNEKSDLYSFGVVILELVTGRHPVDAEFGEDLVKWVCTTLDQKGVDHVLDPKLDSCFKEEICKVLNIGILCTSPLPINRPSMRRVVKMLQDVGGENQPKPVKKDGKLSPYYHEDASDQGSVV* 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0180 989 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 225 957 - -
Vvi10g0180 989 Pfam Leucine rich repeat 110 168 IPR001611 GO:0005515
Vvi10g0180 989 SUPERFAMILY L domain-like 351 600 - -
Vvi10g0180 989 Gene3D Ribonuclease Inhibitor 17 176 IPR032675 -
Vvi10g0180 989 Pfam Protein kinase domain 680 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0180 989 Gene3D Ribonuclease Inhibitor 183 252 IPR032675 -
Vvi10g0180 989 Gene3D Ribonuclease Inhibitor 253 324 IPR032675 -
Vvi10g0180 989 SUPERFAMILY Protein kinase-like (PK-like) 669 956 IPR011009 -
Vvi10g0180 989 SUPERFAMILY L domain-like 33 370 - -
Vvi10g0180 989 Gene3D Ribonuclease Inhibitor 325 608 IPR032675 -
Vvi10g0180 989 Gene3D Transferase(Phosphotransferase) domain 1 765 977 - -
Vvi10g0180 989 SMART serkin_6 678 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0180 989 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 765 973 - -
Vvi10g0180 989 FunFam Receptor-like protein kinase HSL1 662 764 - -
Vvi10g0180 989 SMART LRR_typ_2 180 205 IPR003591 -
Vvi10g0180 989 SMART LRR_typ_2 84 108 IPR003591 -
Vvi10g0180 989 SMART LRR_typ_2 492 516 IPR003591 -
Vvi10g0180 989 SMART LRR_typ_2 109 131 IPR003591 -
Vvi10g0180 989 SMART LRR_typ_2 540 563 IPR003591 -
Vvi10g0180 989 SMART LRR_typ_2 132 156 IPR003591 -
Vvi10g0180 989 FunFam Receptor-like protein kinase HSL1 302 609 - -
Vvi10g0180 989 Pfam Leucine rich repeat N-terminal domain 18 57 IPR013210 -
Vvi10g0180 989 ProSiteProfiles Protein kinase domain profile. 678 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi10g0180 989 MobiDBLite consensus disorder prediction 964 978 - -
Vvi10g0180 989 FunFam Leucine-rich receptor-like protein kinase family protein 198 296 - -
Vvi10g0180 989 ProSitePatterns Protein kinases ATP-binding region signature. 684 707 IPR017441 GO:0005524
Vvi10g0180 989 ProSitePatterns Serine/Threonine protein kinases active-site signature. 809 821 IPR008271 GO:0004672|GO:0006468
Vvi10g0180 989 MobiDBLite consensus disorder prediction 960 989 - -
Vvi10g0180 989 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 17 180 - -
Vvi10g0180 989 Gene3D Phosphorylase Kinase; domain 1 662 764 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0180 Vvi-Chr10 1617819 1621283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0180 14 989 Receptor kinase-like Gene Family AT1G28440 69.442 0.0 1392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi10g0180 Pkinase 2.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0180 - - vvi:100267564 1984.53