Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0176 ATGGAGGCTACCTCCGATGAAGAAAATCAGAACCGGAATAATACGGCTAATAATATGAATTCCAATGAGGCACAGAGCAAGCCCAAGCGCCAGATGAAGACGCCGTTTCAATTGCAGACCCTGGAAAGGGCGTATGCTTTGGAACCGTATCCGACGGAGGCGTCGCGAGCAGAGCTGTCGGAGAAATTAGGGTTGTCAGACAGGCAATTACAGATGTGGTTTTGTCACCGGAGGTTGAAGGATAAGAAAGAGGGACAGGCAAAGGAGGCGGCGTCAAAGAAGCCAAGGAATGCCGTGGCTGAGGAGTTTGAGGATGAGGCACGAAGCGAACACGGGTCGCATTCTGGGTCTGGGTCCCTGTCGGGGTCCAGCCCGTTGGGTTATGGGCAGTTGCCACAGGTGCTCTCTGGAAATATGGGGCCAATGGGGCGAAGGTCTTATGAGTCACCCCAATCGATATTTGAGCTGAGAGTGATTGCTTCTGTGGAGGCCCAGTTGGGCGAGCCGTTGAGGGATGATGGTCCAATTCTCGGCATGGAGTTTGATCCATTACCCCCTGATGCGTTTGGGGCTCCTATTGCAATTGTGGAGCACCAAAAGCAATCAGCATACTGTTACGAGGAGAAAGTATACGAGCATCGTGATGCCAAATCAAAAAAAGCTGCTGCAAGAGCTTTTCATGATCATCCATTTCATCAAGATAAGTCCAGTACTAGACCTGATGCATATGGGCGTGTTGGTCCATCTCACTTCTATGATCGGCCTATTGATGGTCCAAGTTCTGAAACTTCGGCTTTTCTTCATAGAACTGAACCATCTTCTAGAGAATATGGTGAGCAGGGTTATGTATCTCATGCTCGTGTTCTGTCTCAACAAGACAAACAAGAACGCATTCTTTCATCTCCTGGGGATTATGACTCTGTGCCACGGTCTGATTCCTTCATGAATAGTGGAAAAGATGCTCAGTTTAGTGGTCATTCTATAGGACCCGAAAATTCATATGTATTATCTGACAGGCAAATAACGCATAACGGTGATGTTTTGAGGATGGATAGGAAACGAAAGGGTGAAGAAGCTAGAATCACAACTGATGCTGAAGCCCATGAGAAAAGGATCCGGAAAGAGCTTGAGAAACAAGATATTTTGAGGCGAAAGAGAGAAGAGCAAATAAGGAAAGAAATGGAAAGGCATGACCGTGAAAGACGGAAGGAAGAAGAGAGGTTGATGCGTGAAAGGCAGCGGGAGGTTGAGAGGTTGCAGCGCGAACAGAGACGTGAAATTGAACGAAGGGAAAAATTTTTGCAAAAAGAATCTCTTAGAGTGAGACTAGCTGAGAAAAGGAGGCAAAAGGAGGAGCTTCGCAGGGAAAAGGAGGCAGTGAGACTCAAAGCTTCAATTGAAAAGGCAACTGCACGTAGAATTGCTAGAGAATCCATGGAACTTATTGAAGATGACCGTTTGGAACTGATGGAATTGGCTGCCGCAAGCAAAGGGCTGCCCTCAATTGTTTCTCTTGACCATGACACTTTGCAAAACCTCGAGTCATTCAGAGATCTTTTGAGTGTGTTCCCACCCACGTCAGTGCAATTAAGAAGGCCGTTTGCAGTTCAACCTTGGGATGATTCAGAGGAGAATATTGGGAACCTTCTCATGGTCTGGAGATTTTTAATCACTTTTGCCGATGTGCTTCAGTTATGGCCTTTTACTCTTGATGAGTTTGTCCAAGCTTTTCATGACTATGATTCAAGATTGATGGGTGAGATACATATTGCTCTTGTAAAGTTGATAATAAAAGATATTGAAGATGTTGCTAGGACACCATCTCTTGGATTAGGAACAAATCAAAATACTGCTGCTGGTCCAGAAGGTGGCCATCCACACATTGTTGAAGGGGCATATGCATGGGGTTTTGATATCCGGAACTGGCAAAGACACTTGAATCCCTTGACATGGCCTGAAATATTGCGGCAATTTGCGCTCTCTGCAGGATTTGGGCCACAGTTGAAGAAGAGGAGTAGCGAATGGTCATATTCGCGTGAGAACAATGAGATTATTATTCATCATGCACCAGTGTTGATACACACAAGAAAAGGCACAATTAAATGCAACATGCTAAATGTGCCATGTCAATGCTCTAGTGGATGA 2145 0.4569 MEATSDEENQNRNNTANNMNSNEAQSKPKRQMKTPFQLQTLERAYALEPYPTEASRAELSEKLGLSDRQLQMWFCHRRLKDKKEGQAKEAASKKPRNAVAEEFEDEARSEHGSHSGSGSLSGSSPLGYGQLPQVLSGNMGPMGRRSYESPQSIFELRVIASVEAQLGEPLRDDGPILGMEFDPLPPDAFGAPIAIVEHQKQSAYCYEEKVYEHRDAKSKKAAARAFHDHPFHQDKSSTRPDAYGRVGPSHFYDRPIDGPSSETSAFLHRTEPSSREYGEQGYVSHARVLSQQDKQERILSSPGDYDSVPRSDSFMNSGKDAQFSGHSIGPENSYVLSDRQITHNGDVLRMDRKRKGEEARITTDAEAHEKRIRKELEKQDILRRKREEQIRKEMERHDRERRKEEERLMRERQREVERLQREQRREIERREKFLQKESLRVRLAEKRRQKEELRREKEAVRLKASIEKATARRIARESMELIEDDRLELMELAAASKGLPSIVSLDHDTLQNLESFRDLLSVFPPTSVQLRRPFAVQPWDDSEENIGNLLMVWRFLITFADVLQLWPFTLDEFVQAFHDYDSRLMGEIHIALVKLIIKDIEDVARTPSLGLGTNQNTAAGPEGGHPHIVEGAYAWGFDIRNWQRHLNPLTWPEILRQFALSAGFGPQLKKRSSEWSYSRENNEIIIHHAPVLIHTRKGTIKCNMLNVPCQCSSG* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0176 714 MobiDBLite consensus disorder prediction 81 112 - -
Vvi10g0176 714 MobiDBLite consensus disorder prediction 113 131 - -
Vvi10g0176 714 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 1 683 IPR044977 GO:0006357
Vvi10g0176 714 Pfam Homeodomain 27 83 IPR001356 GO:0003677
Vvi10g0176 714 MobiDBLite consensus disorder prediction 8 38 - -
Vvi10g0176 714 MobiDBLite consensus disorder prediction 1 39 - -
Vvi10g0176 714 Pfam DDT domain 544 599 IPR018501 -
Vvi10g0176 714 MobiDBLite consensus disorder prediction 81 146 - -
Vvi10g0176 714 ProSiteProfiles DDT domain profile. 543 602 IPR018501 -
Vvi10g0176 714 Gene3D - 16 100 - -
Vvi10g0176 714 Coils Coil 365 385 - -
Vvi10g0176 714 CDD homeodomain 29 84 IPR001356 GO:0003677
Vvi10g0176 714 ProSiteProfiles 'Homeobox' domain profile. 24 84 IPR001356 GO:0003677
Vvi10g0176 714 SMART testlast3 543 602 IPR018501 -
Vvi10g0176 714 SUPERFAMILY Homeodomain-like 17 84 IPR009057 -
Vvi10g0176 714 SMART HOX_1 26 88 IPR001356 GO:0003677
Vvi10g0176 714 Coils Coil 387 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0176 Vvi-Chr10 1574464 1581523 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0176 24 705 Homeobox Transcription Factor Family AT5G44180 52.907 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vvi10g0176 Homeodomain 4.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0176 - - vvi:100247033 1226.46