Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0175 ATGAATTGGAGATCTCCTCCAGGCGCTCCTTCTGGTATGGTCGGTGTCGGAAAAATAGGTCGCCGGGAAATTTCGCCGGAAAATTTCGCCGGAAAATTTGCCAGCGGTGAGTGGTTTCTAACGACGATCCGACTGACCGGAAAGTATTGGGAGATGGGGAAGATTAAAGGTTGTGAAGATATAGTTTCTACCTTACGCAATGGTTCGGCAGCTGTCAATGCAGTTGCAATCATGAAAGGAAAAGGTTTTTCCCTCTCACGCCGATCCAGGCATCGGTTGACACCTGGAACAGTCAAATTTGCTGTTTTTCATGTTCTTTCACTTGAGGGTAGCAAGGGGCTAACAATATTAGAACTTGCAGACAAGATTCAGAAATCTGGACTTCGAGACTTGACAAGAAGCAAGGCGCCTGAGGCATCCATATCTGCTGCTCTATCACGGGATGCAGCCCTATTTGAAAGAACAGCTCCATGTACATATTGTGTACGACCAACTTTTAGAAAGGATCCCGCTGATGCTGAGAAAGTACTTTCAGCTGCTAGGGAGAAAGTTCATGTATTTGAAAATGGGTTTTTAGCTGGAGAAGATGTTGATGATGTTGAAAGAGATGACGATTCTGAATGTGATGTTGCAGAGGGTCCTGAAGTTGATGATTTAGGCACTCCATCAAATGCAAACAAAAACACCATCCATCTTAATAATGGGGGAAGCACTTGTTCAGGAAATGGCAAAGAGAATGCTTGTAATGATGTAATAAATCCACAAAATGAAGTTGTCAAGGATTTTTCTTCACCCCTTTCAAGTGGCACGAAGGTTACAACCACTGCAAGTATTACACTTAATCAATATGGTGCAGGCAATCCTGATCAAGAAAACGTAGAGATTGATGAAAGCAACTCAGGTGAACCATGGGTTCAAGGACTTGCAGAAGGGGAATACTCTGATCTCAGTGTTGAGGAGCGTCTTAATGCCCTGGTTGCCTTAATTGGTGTTGCAAATGAGGGAAACACTATTCGTGCTGTTCTTGAGGACCGCTTGGAAGCTGCAATAGCCCTTAAAAAGCAAATGTGGGCGGAGGCACAACTGGATAAAAAACGATTGAAAGAAGAGAATATAACTAAAGTACAGTATACATCTTGTATAGCGAGCAAGGCTGATATGAAACCTACTAGTGCTGCAGCAGAGGGCAGCCAGAGCCCATTGCCTGTTGATAATAAAAATAATGAGGCATCTCTTAACACTGCAGTAGGCCAAAAACCTTCTGTCAGTTCACACAATGTTCAGAATCACCTTAGTACATTGCCTACTGAAGGAACCTCAATAGTTCAAGAGTCGACAGTTCCGAATAACTTCATATCTCAACATGGATATGATGCAGAAAGATCACGCTTGCAATTAAAATCTTATATTGCCCACAGAGCAGAAGATGTTTATGTCTACAGGTCATTGCCTCTTGGTCAAGATCGTAGACGTAACAGATACTGGCAGTTTGTTGCATCTGCTTCCAGAAATGACCCTGGTTCCGGCAGGATTTTTGTTGAATTACATGATGGCTATTGGAGGCTTATTAATTCTGAAGAGGCCTTCGATGCTCTTATCACATCTTTGGATACACGAGGGATTAGGGAATCTCACTTGCACGCAATGCTGCAAAAAATTGAGATGGCTTTCAAGGAAAATGTTAGAAGAAATTCTCAGTGTGTTGACAATGTGGGCCAAACTAGAACTACTGTAAAGAATGAAAATACTGAAACGGATTCCAATCCTGATTGCATTGCTGGCTTTGACAGTCCTAACAGTACAGTTTGTGGTTTAGTATCTGATGCATTGGAGCCTTTATCATCTTTTGGGATTGAACTCGGGAGAAATGAGATGGAGAAAAGGGCTACATTGAAGAGATATCAAGATTTTCAAAAGTGGATGTGGAAAGAATGCTTTAATTCAGAAGCATTATGCTCTATGAAATATGGGAAGAAAAGATGCGCCCAGTTGTTGAGCATTTGTGATTTCTGTTTTGAGTGTTATTTTAATGAAGACAATCACTGTCCTTCTTGTCATAGGACGTTTGGATCCTTTGATAATAATGTACATTTTTTAGAACATGTTATCCAATGTGAAAACAAAAAGAAAACAAACCCTGAGGACTTACATATTTCAGATTCTTCTCTTCCCCTGGGAATCAGATTGCTAAAGGCTCTACTAGCTTTTATTGAGGTTTCTATTCCACTGGACGCTCTGGAGTCTTTTTGGATGGAAGGATATCAAAGAGAGACTTGGGGTATGAAGATACAGACCTCATCATCTATTGAGGATCTTCTACAGATTGTCACTTTGTTAGAGGGTGTCATAAAACAGGACCGTTTATCAACAGAGTTCAGGACAACAAAGGAATTGTTGGGCTCCTGTACTTCATCAGGGAATGCTGTATATGATTCTGCTTACACTGGGTCAGTTCCTGTACTTGCATGGATACCACAAACCACGGCAGCTGTGGCTGTCAGACTTTTGGAGCTTGATGCATCTATATCCTACATACATCATGATAAATCCCAATGTCATGATGATAAGAAGGAACTGGGAGAATTCAGAAAGTTTCCATCAAGGTATGCTCCAGTCAAGAATGCTCAAGAGGTTGAAATCAGTGGATTCCCCCAAGATATCCATAAGAAAGAAGAGAACTGGACTGACCTGGGTAATGGACGTGATAGCTCTAGGCATGGGCAAAGGGGTCGTGGGCGAGGGCGTGGTCGCTTACATGGTGAAAAATGGCAGAGAAGAGTTTCTAGTTCCAGACCGCACACTGGAAAGCATAATGCCAGGGACAATCCGAATTTAAATCAAAGACGAGGACTGCAGGACCGAAGAACTCGCGAACAGGAATCGCAAGGACAGGGTTGTAGGCGAGGACCCCGAACAGTTAGGAGAAGAGCAGATAAAAGGGCTGTCAAGGGGACTCCGCTTGGTCATTTGGGTGACATGGTTAGGCCTAAAGGCAAGGGTGAATCACATAGAAACTTGATCGGGGAGGGATGGGGCAAATTCACAATGATGCAAATGGATAATGCTGATAATCATAGCAGTGGGGATACTGTGGAATCTGACGATAATGCTCCAGAGATGGAACATGAGCATGGGAGCTGGGGGCTGGGTTTTGATGGTGTTTCAGGTGGTCAGACTGGGGATCTAATGGAAGTAAGTGATGAGGATGCAGAGGGTTCTGAAGATGATAATGGGAGTGAAGAGGAAGGTGATGATGACAATTCGGAAGATGCAAATATGAATGAGTGCTCAGATGGACTAGTAAATGGGGTTGGAAATGAAGATCTAGGCACAGAATATGCTACTTCAGAAGATTATAGTGATTGA 3366 0.4281 MNWRSPPGAPSGMVGVGKIGRREISPENFAGKFASGEWFLTTIRLTGKYWEMGKIKGCEDIVSTLRNGSAAVNAVAIMKGKGFSLSRRSRHRLTPGTVKFAVFHVLSLEGSKGLTILELADKIQKSGLRDLTRSKAPEASISAALSRDAALFERTAPCTYCVRPTFRKDPADAEKVLSAAREKVHVFENGFLAGEDVDDVERDDDSECDVAEGPEVDDLGTPSNANKNTIHLNNGGSTCSGNGKENACNDVINPQNEVVKDFSSPLSSGTKVTTTASITLNQYGAGNPDQENVEIDESNSGEPWVQGLAEGEYSDLSVEERLNALVALIGVANEGNTIRAVLEDRLEAAIALKKQMWAEAQLDKKRLKEENITKVQYTSCIASKADMKPTSAAAEGSQSPLPVDNKNNEASLNTAVGQKPSVSSHNVQNHLSTLPTEGTSIVQESTVPNNFISQHGYDAERSRLQLKSYIAHRAEDVYVYRSLPLGQDRRRNRYWQFVASASRNDPGSGRIFVELHDGYWRLINSEEAFDALITSLDTRGIRESHLHAMLQKIEMAFKENVRRNSQCVDNVGQTRTTVKNENTETDSNPDCIAGFDSPNSTVCGLVSDALEPLSSFGIELGRNEMEKRATLKRYQDFQKWMWKECFNSEALCSMKYGKKRCAQLLSICDFCFECYFNEDNHCPSCHRTFGSFDNNVHFLEHVIQCENKKKTNPEDLHISDSSLPLGIRLLKALLAFIEVSIPLDALESFWMEGYQRETWGMKIQTSSSIEDLLQIVTLLEGVIKQDRLSTEFRTTKELLGSCTSSGNAVYDSAYTGSVPVLAWIPQTTAAVAVRLLELDASISYIHHDKSQCHDDKKELGEFRKFPSRYAPVKNAQEVEISGFPQDIHKKEENWTDLGNGRDSSRHGQRGRGRGRGRLHGEKWQRRVSSSRPHTGKHNARDNPNLNQRRGLQDRRTREQESQGQGCRRGPRTVRRRADKRAVKGTPLGHLGDMVRPKGKGESHRNLIGEGWGKFTMMQMDNADNHSSGDTVESDDNAPEMEHEHGSWGLGFDGVSGGQTGDLMEVSDEDAEGSEDDNGSEEEGDDDNSEDANMNECSDGLVNGVGNEDLGTEYATSEDYSD* 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0175 1121 MobiDBLite consensus disorder prediction 921 938 - -
Vvi10g0175 1121 MobiDBLite consensus disorder prediction 1064 1092 - -
Vvi10g0175 1121 MobiDBLite consensus disorder prediction 882 1003 - -
Vvi10g0175 1121 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 299 343 IPR028942 -
Vvi10g0175 1121 ProSiteProfiles HARE-type HTH domain profile. 96 165 IPR007759 GO:0006355
Vvi10g0175 1121 MobiDBLite consensus disorder prediction 947 964 - -
Vvi10g0175 1121 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 481 553 IPR028941 -
Vvi10g0175 1121 Pfam HB1, ASXL, restriction endonuclease HTH domain 96 163 IPR007759 GO:0006355
Vvi10g0175 1121 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 56 1121 IPR044977 GO:0006357
Vvi10g0175 1121 MobiDBLite consensus disorder prediction 1021 1121 - -
Vvi10g0175 1121 MobiDBLite consensus disorder prediction 883 909 - -
Vvi10g0175 1121 MobiDBLite consensus disorder prediction 1027 1046 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0175 Vvi-Chr10 1562230 1570135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0175 56 1052 Homeobox Transcription Factor Family AT1G28420 43.202 0.0 695
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0175 - - vvi:100247033 2074.29