Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0162 ATGGCGCCCAAGGAGAAAGTTGCCGGAGTTAAGCCTAGCGCCAACGCCAAGGAGGTGCATTTCAGGGGCGTTAGGAAGAGACCGTGGGGGAGATACGCCGCCGAGATCAGGGATCCAGGGAAGAAGAGCCGTGTATGGCTTGGAACTTTTGATACGGCGGAGGAAGCCGCCAAGGCGTACGACTCCGCCGCCCGGGAGTTTCGCGGCGCCAAGGCGAAGACCAACTTTCCTTTGGTTTCTGAGAATCTGAACAACAATAATCAGAGTCCGAGCCAGAGCAGCACCGTGGAGTCTTCCAGCCGGGAGGGATTTTCGCCGGCTCTAATGGTTGATTCCTCTCCATTGGATCTTAATCTGCTGCACGGAGGTGGCGTCGGCCATCATCAGTTTCAAGTTTCCTCCCCTTCGCCGGCTGCCGGAATTGTTCCGACCGGAGGCTTGCCTGCGGCGAATCACCTTTTCTACTTTGACGCGATGTTACGGACTGGGAGAGTGAATCAAGATTTTCAGAGACTGAGGTTCGACCGTGCGGCGTCTGATTTCCGCGCCGCGCTTACCGGTGGGGTCCAGAGCGATTCCGACTCATCATCTGTGGTTGATTTGAACCACAACGATCTCAAGCCTCGCGCACGCGTTCTCATCGATCTCGATCTGAACCGCCCTCCCCCGCCTGAAATCGCCTGA 684 0.5702 MAPKEKVAGVKPSANAKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDSAAREFRGAKAKTNFPLVSENLNNNNQSPSQSSTVESSSREGFSPALMVDSSPLDLNLLHGGGVGHHQFQVSSPSPAAGIVPTGGLPAANHLFYFDAMLRTGRVNQDFQRLRFDRAASDFRAALTGGVQSDSDSSSVVDLNHNDLKPRARVLIDLDLNRPPPPEIA* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0162 227 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Vvi10g0162 227 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
Vvi10g0162 227 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
Vvi10g0162 227 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 199 - -
Vvi10g0162 227 Gene3D AP2/ERF domain 19 79 IPR036955 GO:0003700|GO:0006355
Vvi10g0162 227 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Vvi10g0162 227 FunFam Ethylene-responsive transcription factor 2 19 78 - -
Vvi10g0162 227 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Vvi10g0162 227 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Vvi10g0162 227 MobiDBLite consensus disorder prediction 80 105 - -
Vvi10g0162 227 CDD AP2 20 77 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0162 Vvi-Chr10 1443310 1444059 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0162 15 135 AP2-EREBP Transcription Factor Family AT3G15210 58.647 4.05e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi10g0162 AP2 9.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0162 K09286 - vvi:100248784 380.948