Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0161 ATGGCGTCTTCTCGTGAGGGCCACTACAGAGGAGTGAGAAAGAGGCCATGGGGGAGATACGCAGCTGAGATACGCGATCCTTGGAAGAAAACCAGAGTCTGGTTGGGCACTTTCGATACGCCAGAAGAGGCTGCTTTAGCCTATGATGGTGCAGCTAGATCCCTCAGAGGAGCCAAGGCCAAAACCAACTTCCCCGCACCCGCCACTGCTTTATCACTCGACCTCAACGCGCCATCCGACCGCTGGAGCTCGCCCTCCGGCCGCCTCGTACTCGGTGAGTTTCTGCAGACGGGTGTTCTCAAAGACATGAGCTGCGAGGGTGGTCCCTCCGCCAAATCTGACAGTACTGTTTCCGTCGCGGTTCCGGCACCGGAAGTCCCTACTCCGGCATCGTTTTTTGGGATTGTCCGACGTGGGTTGCCCATCGACTTGAACGAGCCTCCACCGTTGTGGCTGTGA 459 0.5795 MASSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPAPATALSLDLNAPSDRWSSPSGRLVLGEFLQTGVLKDMSCEGGPSAKSDSTVSVAVPAPEVPTPASFFGIVRRGLPIDLNEPPPLWL* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0161 152 SMART rav1_2 8 71 IPR001471 GO:0003700|GO:0006355
Vvi10g0161 152 CDD AP2 8 66 IPR001471 GO:0003700|GO:0006355
Vvi10g0161 152 PRINTS Ethylene responsive element binding protein signature 9 20 IPR001471 GO:0003700|GO:0006355
Vvi10g0161 152 PRINTS Ethylene responsive element binding protein signature 31 47 IPR001471 GO:0003700|GO:0006355
Vvi10g0161 152 Pfam AP2 domain 8 57 IPR001471 GO:0003700|GO:0006355
Vvi10g0161 152 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 8 85 - -
Vvi10g0161 152 FunFam Ethylene-responsive transcription factor 2 8 66 - -
Vvi10g0161 152 SUPERFAMILY DNA-binding domain 8 66 IPR016177 GO:0003677
Vvi10g0161 152 ProSiteProfiles AP2/ERF domain profile. 8 65 IPR001471 GO:0003700|GO:0006355
Vvi10g0161 152 Gene3D AP2/ERF domain 8 66 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0161 Vvi-Chr10 1430129 1430587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi10g0161 1 152 AP2-EREBP Transcription Factor Family AT1G28360 51.531 1.64e-48 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vvi10g0161 AP2 2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0161 - - vvi:100243417 306.219