Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi10g0159 ATGCCTTCGCCCCCCAGTGACGGTGGAACCCACCCTCCTCCTCCGTGGACCGATCACTCCAACGACGCCGTTCTCCGTGGCGGCGGCGGCCGAGGTGGAGGAGATGGTCGTGGTTTGCCCGATTCTGCAATCGGAGCTGCTGGGGATCGTCGAGATGTTAGCAGAGATAAGGAGTCCAAGGGCCATGTCAAGCACTTACTATCAGGTTCTTCTACTCTAGGAAAATTCGAAGCAGGTCTACAATCAGATACCCTTGCTGTGGAAGATGGTAGTAGCAGTTTCAAAATTTCTGGCCTTTCAAAGGAGCAGACAAAATCATGTGTCAATGATGATCATTCTAAGTATCCAAAATTAGGCTACCATTTCTTTCCCTATGAGGAGAACAGAAATACAAAATCAGCTGTTGATGGGAAATATACAGAGGCTATGCCAGAAAAGAAAAGTGAAATTATGGATGCTAGGAACACCAAACCATTTAGTGTCCCTGGGAAAGGGGCTGCTGTTGTGATCCCGATGAGAGATGTCTTTGGTGAGGAGGCTAATATTGTTCAATGTTCTAATAAAGAAATCAAGCAAATAGACTTCCAGTCACCGGAGGAAATGAACCAAAGAGCATCAAGGCTGGCTGCTAGTCTGTTAAGGCGTAGAAGTCTGTCCCCTACTGATTCAAAGGATGAAAACAAAAGGCCAGCAATTATTTGTCAATATTTTTCTCAAGGTTGGTGTGTCAATGGGCCAAATTGCAAGTTTATGCACAACATAGATAGCATGGACAATACTAACCAACAGATTGGGGGAGATGTAGCCATTGCTACTAGGAGATATGAATCCCAAGCAGATAAAGGTTTGAGTGAAATTCCTGAAAGAACTACATTGTTTTGTTTTCCTGGGAGGGTCCGCCAATGGGAAAATGAAGAAAGCCTAACGTGGCATCAGTACAATGGAAAGCACAGATTCTCATCTCTTCAAAGAGATGACCTATCTTATGGTTTTCCTGCTGACTCCCAAAGATTCCCCATGTACAAAGATGGTCCTAGAAATTACGTTTCACCAAACACTGAAGGCAGTTATCCTATACTTGGGAATCGCTTGTTTCCTGAGTATGGATCTTTCTCAGTTGGCTCAAGCACCTTGGCTATATCATCAAAAACTTATCAAACCAGCAGGACTTTATCTTCCAAAGCAACAAGTCTAGAAGGATTGGCTGGAAAGCAAAATGAGTTCACACTCAATGATTATGCTTCACCAGTTCTAAGCCATCAGCCAAATCCAAGGGTGGACACCACTCTTCAAACAACAAACTTGTTACCTTCTCATCAGAGCTCAGCCTGGGGAGGATATTCCTTCTCCCAGAATGCTGGTCCTTGTGTCCAGAAGTGTGTTGACAGTGATACTAAAACAAAGTTTTCTTCAGATGATTGGGAGCCATCTATACCTTTTCGTCCATCATATTTTTCTGCTTTTACAGATATGTCATCTGCAAGAAGCGTGCATGACACTGTTGGGGATACCTGTGAGGAACACCCCTTAGGAGATAGACCATATAAAGTGTCTTGCCCTACACAAGGGGCATCCATCCTTGGTTCATCGCATCAGCGGGTATATCATGATCCTGTTTTACCTGGGACTCTTGGCCCAGAGTATAATGCTGATATAGAATCTATTCATATTCATGATAAATTCGATCAGAGTACCTTGGACAAGGGTGTCTATGGACATCAGAGAGACTTCTTTACGAATGAAACAGAGCCTGCAGGAAGTTCTGTTGCTGAACTTCAAGATTCTCAGCTTAAAGAAGGGAAGCCTGATGGCCATACACGGGTTGAAGATGTTTCAGATCAAAATCCTAGAAATTATAGTGATGGAGCAAGCCACGAGGAGGAATTAAAAATGGAATGGGGCAAGCAAAGTAATGCAAAATGTGATGATCATAAAATAGATGAGGATGTGCAAAAAGAATCAAAAGCCCTAAGACATTTTCGTTTTGTACTCATAGATTTTATAAAAGATTTGGTGAGACCTACTTGGCACAGGGGACAGTTGAGCAAGGATGCACACAACTCAATAGTAAAAAGATCAGTAGATAAAGTACTTAGCACATTAGAACCCCACCAAATTCCCTCTACCGAAGAAGCCATTCATCACTATCTTTCTGTGTCCCAACCAAAGATTGCCAAACTTGTCCAGGGGTATGTTGAGAAACATCGCAGGATGAATTCGGGCATTTCTGTTCTATAG 2238 0.4312 MPSPPSDGGTHPPPPWTDHSNDAVLRGGGGRGGGDGRGLPDSAIGAAGDRRDVSRDKESKGHVKHLLSGSSTLGKFEAGLQSDTLAVEDGSSSFKISGLSKEQTKSCVNDDHSKYPKLGYHFFPYEENRNTKSAVDGKYTEAMPEKKSEIMDARNTKPFSVPGKGAAVVIPMRDVFGEEANIVQCSNKEIKQIDFQSPEEMNQRASRLAASLLRRRSLSPTDSKDENKRPAIICQYFSQGWCVNGPNCKFMHNIDSMDNTNQQIGGDVAIATRRYESQADKGLSEIPERTTLFCFPGRVRQWENEESLTWHQYNGKHRFSSLQRDDLSYGFPADSQRFPMYKDGPRNYVSPNTEGSYPILGNRLFPEYGSFSVGSSTLAISSKTYQTSRTLSSKATSLEGLAGKQNEFTLNDYASPVLSHQPNPRVDTTLQTTNLLPSHQSSAWGGYSFSQNAGPCVQKCVDSDTKTKFSSDDWEPSIPFRPSYFSAFTDMSSARSVHDTVGDTCEEHPLGDRPYKVSCPTQGASILGSSHQRVYHDPVLPGTLGPEYNADIESIHIHDKFDQSTLDKGVYGHQRDFFTNETEPAGSSVAELQDSQLKEGKPDGHTRVEDVSDQNPRNYSDGASHEEELKMEWGKQSNAKCDDHKIDEDVQKESKALRHFRFVLIDFIKDLVRPTWHRGQLSKDAHNSIVKRSVDKVLSTLEPHQIPSTEEAIHHYLSVSQPKIAKLVQGYVEKHRRMNSGISVL* 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi10g0159 745 SUPERFAMILY CCCH zinc finger 228 253 IPR036855 GO:0046872
Vvi10g0159 745 MobiDBLite consensus disorder prediction 596 626 - -
Vvi10g0159 745 MobiDBLite consensus disorder prediction 1 65 - -
Vvi10g0159 745 Pfam Torus domain 223 261 IPR032297 -
Vvi10g0159 745 MobiDBLite consensus disorder prediction 580 594 - -
Vvi10g0159 745 MobiDBLite consensus disorder prediction 579 626 - -
Vvi10g0159 745 ProSiteProfiles Zinc finger C3H1-type profile. 228 255 IPR000571 GO:0046872
Vvi10g0159 745 MobiDBLite consensus disorder prediction 48 64 - -
Vvi10g0159 745 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 49 735 - -
Vvi10g0159 745 Gene3D - 219 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi10g0159 Vvi-Chr10 1407272 1411231 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi10g0159 Torus 1e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi10g0159 - - vvi:100852793 1483.77